Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0783
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 404 NEIHILSKFESSTSSLMCGLTR 339
           N +HILSK++  TS+ +  L R
Sbjct: 24  NSVHILSKYQLITSTTLNWLPR 45


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 380 FESSTSSLMCGLTRCIRSLSGLLQGTEPFGST*TRVPSM 264
           ++  T   + G TR + +  G L  TEP GS   + PSM
Sbjct: 179 YQCRTKHRLTGETR-LSATKGRLVITEPVGSVRPKFPSM 216


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 188 PPATSNNEPNAKRQRLDSSEL 250
           PP T   E N K+  LDS ++
Sbjct: 317 PPETEEEEENDKKLDLDSIDM 337


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 244 GVIHNSTIEGTRVYVLPNGSV 306
           G  HN  +    + + PNGSV
Sbjct: 128 GHFHNIIMPNVYIRIFPNGSV 148


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 244 GVIHNSTIEGTRVYVLPNGSV 306
           G  HN  +    + + PNGSV
Sbjct: 128 GHFHNIIMPNVYIRIFPNGSV 148


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 488 DPTDCISASVSSCMETPKLFPS 423
           DP+  +  S S  +E+  LFPS
Sbjct: 400 DPSLFVETSASELVESSVLFPS 421


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 86  PEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATS 202
           P+  ++L + L     Q + +SD        + TPPA+S
Sbjct: 333 PKYRLELQKRLPWLELQEKPISDSTSTTTETVNTPPASS 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,985
Number of Sequences: 438
Number of extensions: 4085
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)