Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0783
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51530.1 68416.m05643 F-box family protein various predicted ...    29   2.8  
At5g58890.1 68418.m07378 MADS-box family protein various predict...    28   4.8  
At3g47080.1 68416.m05112 expressed protein                             28   4.8  
At3g43684.1 68416.m04660 hypothetical protein                          28   4.8  
At1g06650.2 68414.m00705 2-oxoglutarate-dependent dioxygenase, p...    28   4.8  
At1g06650.1 68414.m00704 2-oxoglutarate-dependent dioxygenase, p...    28   4.8  
At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase, p...    28   4.8  
At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containi...    28   6.4  
At1g65390.2 68414.m07419 disease resistance protein (TIR class),...    28   6.4  
At1g65390.1 68414.m07420 disease resistance protein (TIR class),...    28   6.4  
At5g25910.1 68418.m03077 disease resistance family protein conta...    27   8.4  
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ...    27   8.4  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    27   8.4  
At1g53480.1 68414.m06062 expressed protein                             27   8.4  

>At3g51530.1 68416.m05643 F-box family protein various predicted
           proteins, Arabidopsis thaliana; contains Pfam profile
           PF00646: F-box domain
          Length = 455

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +2

Query: 215 NAKRQRLDSSELSTTQP*KEHGFMYCRMVQYPATSHSVILYILLSHTLGNLLKIQ 379
           +AKR  LD S L  T P +    MY ++V     +H V  + LL+H L +  K+Q
Sbjct: 294 SAKRLSLDLSPLKITYPTE---VMYHQLVYLEMHTHKVEWWNLLTHMLDSSPKLQ 345


>At5g58890.1 68418.m07378 MADS-box family protein various predicted
           proteins, Oryza sativa and Arabidopsis thaliana
          Length = 294

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +1

Query: 340 LVKPHIRELVEDSNLLKMWI------SFMIPKIEDGNNFGVSIQEDTLAEIQSVGSEAAA 501
           L+ PH  ++  D NL++ W       S M+ K  DG  F +  QE      + V S +A 
Sbjct: 200 LISPHDGQIQMDPNLMEKWTDLALTQSLMMSKGNDGTQF-MQRQEQPYYNREQVVSRSAG 258

Query: 502 FFV 510
           F V
Sbjct: 259 FNV 261


>At3g47080.1 68416.m05112 expressed protein
          Length = 515

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 170 NIPIPTPPATSNNEPNAKRQRLDSSELSTTQP*KEHGFMYCRMVQYPATSH 322
           N+PI   P   N  P+  +QR+D S L  +   K  G  +   + +   SH
Sbjct: 289 NLPIAASPPVVNKGPDQTQQRIDFSSLKEST--KLDGSKWLGSINFDKVSH 337


>At3g43684.1 68416.m04660 hypothetical protein
          Length = 340

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 95  IVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELST 256
           IV++  L+E+    N N     Q        PPATSN  P A R+ L+ + ++T
Sbjct: 274 IVEIARLIESQEKDNHNYHVRQQS------RPPATSNLSPAAAREILEKAGITT 321


>At1g06650.2 68414.m00705 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967); contains
           Pfam profile: PF00671 Iron/Ascorbate oxidoreductase
           family
          Length = 369

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 226 SKTGLIGVIHNSTIEGTRVYVLPNGSVPCNKPL-SDLIHL 342
           +KTG+ G++ +   +  R++  P   +   KPL SDL+HL
Sbjct: 22  TKTGVKGLVDSGVSQVPRIFHHPTVKLSTPKPLPSDLLHL 61


>At1g06650.1 68414.m00704 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967); contains
           Pfam profile: PF00671 Iron/Ascorbate oxidoreductase
           family
          Length = 314

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 226 SKTGLIGVIHNSTIEGTRVYVLPNGSVPCNKPL-SDLIHL 342
           +KTG+ G++ +   +  R++  P   +   KPL SDL+HL
Sbjct: 22  TKTGVKGLVDSGVSQVPRIFHHPTVKLSTPKPLPSDLLHL 61


>At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase,
           putative Similar to Arabidopsis 2A6 (gb|X83096) and to
           tomato ethylene synthesis regulatory protein E8
           (SP|P10967); EST gb|T76913 comes from this gene
          Length = 360

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 226 SKTGLIGVIHNSTIEGTRVYVLPNGSVPCNKP 321
           +KTG+ G+I     E  R++ LP GS+   KP
Sbjct: 18  TKTGVKGLIDAHITEIPRIFCLPQGSLSDKKP 49


>At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P28290 Sperm-specific
           antigen 2 (Cleavage signal-1 protein) (CS-1) Homo
           sapiens; contains Pfam profile PF00515: TPR Domain
          Length = 649

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 32  DYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPP 193
           D  +++ +K E + +   P + +KL  L +  NF      D+  D +IPIPTPP
Sbjct: 2   DRPETIAVKCEPMTVDS-PSRPLKLVVLADL-NFNPPETDDL--DSSIPIPTPP 51


>At1g65390.2 68414.m07419 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 77  KGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPN 217
           + F + IVK  + ++ + FQ RN    +QD ++P      T +  PN
Sbjct: 173 RDFVKSIVKAVKKVQKNFFQRRNGEIEYQDFSVPACKLTITMHESPN 219


>At1g65390.1 68414.m07420 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 77  KGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPN 217
           + F + IVK  + ++ + FQ RN    +QD ++P      T +  PN
Sbjct: 173 RDFVKSIVKAVKKVQKNFFQRRNGEIEYQDFSVPACKLTITMHESPN 219


>At5g25910.1 68418.m03077 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-5D [Lycopersicon
           esculentum] gi|3894393|gb|AAC78596;
          Length = 811

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 470 SASVSSCMETPKLFPSSIFGIINEIHILSKFESSTSSLMCGLTRCIRSLSGL 315
           S ++S+   +   F   I   I E+H L   + ST+     + RCI +LS L
Sbjct: 417 SVTISNNTRSNNNFTGKIPSFICELHSLILLDLSTNKFNGSIPRCIANLSTL 468


>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 781

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 164 DLNIPIPTPPATSNNEPNAKRQRLDSS 244
           D +I    P  +SNN  NAKR R  SS
Sbjct: 679 DFSIDTEDPSPSSNNNNNAKRNRSSSS 705


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 167  LNIPIPTPPATSNNEPNAKRQRLDSSELSTTQ 262
            L+    TPPATS+ + N    +L+SS +++T+
Sbjct: 1521 LSTTASTPPATSSGDENHISVKLESSNVASTK 1552


>At1g53480.1 68414.m06062 expressed protein
          Length = 193

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 113 LLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLD 238
           +LET+ F N   S + Q L IP   PP+   N+    R+R +
Sbjct: 16  ILETNRFINLPDSRLTQTLEIPAAAPPSLWLNQRVLSRRRAE 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,486,863
Number of Sequences: 28952
Number of extensions: 301592
Number of successful extensions: 935
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)