Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0782
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    27   1.6  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    25   6.3  

>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
 Frame = +1

Query: 49  RLTDEVL-KDPTNVKKLKYQENVL---GKNVSPSLEKD*SYKKEFISFKPDS 192
           +LT+E+L KD  N     ++  VL    K VS SLE++ +Y K+ I F PD+
Sbjct: 166 KLTNELLEKDIYNNSAWNHRFYVLFETSKVVSWSLEEELNYLKDKILFAPDN 217


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -3

Query: 215 VWIFSSIHESGLKL 174
           V+IFSS+HESG +L
Sbjct: 343 VYIFSSLHESGKQL 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,581
Number of Sequences: 5004
Number of extensions: 32806
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)