Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0782
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0659 + 30955162-30955377,30955446-30955748                       28   3.6  
08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128     28   4.8  
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270...    27   8.4  

>01_06_0659 + 30955162-30955377,30955446-30955748
          Length = 172

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 130 KHSFRAHSPDISASSHWLGLSILHPLACL 44
           KH  R+H PD   +   LG + LH L C+
Sbjct: 51  KHISRSHPPDRQHNHSGLGTTTLHALPCV 79


>08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128
          Length = 1226

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 481 YTGKTIYLQIYFIYYNMNKESKSISFKIRIRVWKMKLINE*TNNSSQQ 338
           Y G T +L+  F+Y ++  E   I ++  +R W  +  +  T N S +
Sbjct: 694 YEGLTYHLKSCFLYMSIFPEDSDIRYRRLLRRWTAEGYSRATRNRSNE 741


>09_03_0029 +
           11724581-11724583,11726413-11726610,11726874-11727038,
           11727217-11727283,11727645-11727812,11728070-11728194,
           11728288-11728446,11728552-11728714,11728795-11728920,
           11729000-11729083,11729161-11729528,11729613-11729813,
           11729909-11730018,11730113-11730197,11730360-11730488,
           11730580-11730667,11730805-11730893,11730968-11731267
          Length = 875

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 81  QCEEAEISGECARKEC 128
           +C E+++ G C RKEC
Sbjct: 43  ECTESDLDGTCLRKEC 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,954,701
Number of Sequences: 37544
Number of extensions: 165353
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)