Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0782
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    27   5.7  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    27   5.7  
U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U56966-10|AAA98722.1|  686|Caenorhabditis elegans Amyloid precur...    27   10.0 
U56966-9|AAK68242.1|  684|Caenorhabditis elegans Amyloid precurs...    27   10.0 
U41010-1|AAF98589.2|  313|Caenorhabditis elegans Serpentine rece...    27   10.0 
U00240-1|AAC46470.1|  680|Caenorhabditis elegans beta-amyloid pr...    27   10.0 

>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 130 KHSFRAHSPDISASSHWLGLSILHPLACLHVGLRXTCYT 14
           KH    + P+++A  +    S  HP AC+  G R T  T
Sbjct: 214 KHPDAKNDPNVTAVRYISAESPKHPYACIECGKRFTTVT 252


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 130 KHSFRAHSPDISASSHWLGLSILHPLACLHVGLRXTCYT 14
           KH    + P+++A  +    S  HP AC+  G R T  T
Sbjct: 332 KHPDAKNDPNVTAVRYISAESPKHPYACIECGKRFTTVT 370


>U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical
           protein C23F12.2 protein.
          Length = 941

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 118 GKNVSPSLEKD*SYKKEFISFKPDSCIELKIHTV 219
           G+ +  S+E+  S K   +SF PD   + KIH +
Sbjct: 772 GREIPLSIEEQGSSKVHQVSFTPDGAGQYKIHVL 805


>U56966-10|AAA98722.1|  686|Caenorhabditis elegans Amyloid
           precursor-like protein1, isoform a protein.
          Length = 686

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/68 (22%), Positives = 30/68 (44%)
 Frame = +1

Query: 49  RLTDEVLKDPTNVKKLKYQENVLGKNVSPSLEKD*SYKKEFISFKPDSCIELKIHTVKKL 228
           R  ++  KDP   +K K Q N   +    SLE++    ++ I    +  ++  ++  K+ 
Sbjct: 285 RYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQAMLNEKKRD 344

Query: 229 KCHTFNAA 252
             H +  A
Sbjct: 345 ATHDYRQA 352


>U56966-9|AAK68242.1|  684|Caenorhabditis elegans Amyloid
           precursor-like protein1, isoform b protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/68 (22%), Positives = 30/68 (44%)
 Frame = +1

Query: 49  RLTDEVLKDPTNVKKLKYQENVLGKNVSPSLEKD*SYKKEFISFKPDSCIELKIHTVKKL 228
           R  ++  KDP   +K K Q N   +    SLE++    ++ I    +  ++  ++  K+ 
Sbjct: 285 RYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQAMLNEKKRD 344

Query: 229 KCHTFNAA 252
             H +  A
Sbjct: 345 ATHDYRQA 352


>U41010-1|AAF98589.2|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein19 protein.
          Length = 313

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 322 CNILTCLLFLILI 284
           CNIL CLLFLI +
Sbjct: 50  CNILMCLLFLIFV 62


>U00240-1|AAC46470.1|  680|Caenorhabditis elegans beta-amyloid
           protein precursor protein.
          Length = 680

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/68 (22%), Positives = 30/68 (44%)
 Frame = +1

Query: 49  RLTDEVLKDPTNVKKLKYQENVLGKNVSPSLEKD*SYKKEFISFKPDSCIELKIHTVKKL 228
           R  ++  KDP   +K K Q N   +    SLE++    ++ I    +  ++  ++  K+ 
Sbjct: 279 RYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQAMLNEKKRD 338

Query: 229 KCHTFNAA 252
             H +  A
Sbjct: 339 ATHDYRQA 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,636,752
Number of Sequences: 27780
Number of extensions: 180800
Number of successful extensions: 449
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)