Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0782
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   3.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   3.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   5.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.4  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 316 ILTCLLFLILIRNQN*SITKILLH*MCDISIFSQYGSLVRYTNPV 182
           +L C L   L+     ++T IL      +S  + YG+L+  TN +
Sbjct: 561 VLVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGALLTKTNRI 605


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 316 ILTCLLFLILIRNQN*SITKILLH*MCDISIFSQYGSLVRYTNPV 182
           +L C L   L+     ++T IL      +S  + YG+L+  TN +
Sbjct: 651 VLVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGALLTKTNRI 695


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 209 IFSSIHESGLKLINSFL 159
           + S+ HE GLK+I  F+
Sbjct: 105 LVSAAHEKGLKIILDFV 121


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 209 IFSSIHESGLKLINSFL 159
           + S+ HE GLK+I  F+
Sbjct: 105 LVSAAHEKGLKIILDFV 121


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 76   PTNVKKLKYQENVLGKNVSPSLEKD*SYKKEFISFKPD 189
            P N K  K  + ++ ++ S S      YK    S  PD
Sbjct: 937  PVNKKVYKQNDYIVDESSSSSFYSSFLYKSSESSCNPD 974


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,208
Number of Sequences: 438
Number of extensions: 2180
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)