Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0781
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    30   0.37 
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   1.1  
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    27   3.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   3.5  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   6.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   6.1  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    25   8.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.0  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 483 FWGRGAVKHKFGTLKGAPDLELDGGKPRTW 572
           +WGR   +H  G L+G P+L     +  +W
Sbjct: 227 YWGRAIARHFVGQLRGGPNLTYSSVQNASW 256


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 473 RVMVHVVGHRPDRRFFAL*RWSPRSLIVDSCSK 375
           + +V +    PD +FF +  W P  L + SC K
Sbjct: 210 KFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFK 242


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 645 TRNVTATLAQALAPDPFAFFPSFHATFAAFPRQA 544
           T+NV AT+  AL   P    P   + +A FP  A
Sbjct: 75  TKNVDATIENALRGQPLPLPPRNSSLYARFPLSA 108


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +1

Query: 43  PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 207
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 208 SCA 216
           S A
Sbjct: 232 SDA 234


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 410 SPRSLIVDSCSKLEQHSTLSRSILLI 333
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 279 VKSAHFLTNRPKSAKSLINQKNRP 350
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 501 VKHKFGTLKGAPDLELDGGKPRTWRERKGRKRKDRAL 611
           ++  F T+K   ++E+ GGK R W E  G++ + R +
Sbjct: 232 IQTNFNTIKSDIEMEMAGGKAR-WPEVFGKEVRYRTV 267


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 556 PPSSSKSGAPFRVPNLCFTAPRP 488
           PPS   S  P RVP+L   AP P
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPP 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,065
Number of Sequences: 5004
Number of extensions: 62103
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)