Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0781
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0036 + 3217163-3217584,3217752-3218322 30 1.6
02_03_0227 + 16601538-16601908,16603197-16603378,16603495-166035... 29 2.7
02_01_0481 + 3459443-3460303 29 3.6
08_02_0934 + 22747742-22748644 29 4.8
08_01_0108 - 791835-792398 29 4.8
01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296 29 4.8
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058... 28 6.3
07_03_1055 - 23612968-23613038,23614625-23614763,23614854-236150... 28 6.3
11_04_0287 + 15796081-15796206,15796298-15796756 28 8.4
07_01_0045 - 357463-357921 28 8.4
06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149... 28 8.4
06_01_0092 - 775290-775691 28 8.4
04_03_0284 + 13896307-13896765 28 8.4
03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672 28 8.4
03_05_0358 - 23438416-23439282,23440116-23440163,23440343-234403... 28 8.4
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 67 ITIHWPSFYNVV-TGKTLALPNLIALQH 147
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>02_03_0227 +
16601538-16601908,16603197-16603378,16603495-16603577,
16604609-16604717,16606754-16606806,16606988-16607023
Length = 277
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 489 GRGAVKHKFGTLK-GAPDLELDGGKPRTWRERKGR-KRKDRALGPG 620
G AV+ + GT+K GAP +E G + W R+ R +R D G G
Sbjct: 2 GAPAVEARRGTVKMGAPAVEARRGAAKRWEARRRRGRRGDGGAGGG 47
>02_01_0481 + 3459443-3460303
Length = 286
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 525 KGAPDLELDGGKPRTWRERKGRKRKDRALGPGQV*RSRC 641
K A ++++ GG+ R W+ +GR+R + L + R C
Sbjct: 3 KAAAEMDVGGGEGRRWKRTRGRQRIEMKLIENKEARQVC 41
>08_02_0934 + 22747742-22748644
Length = 300
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 613 PSARSFRFLPFLSRHVRGFPPSSSKSGA 530
P+ SF LPF+ + R PPSSS G+
Sbjct: 11 PNIDSFSQLPFIRQAAREKPPSSSSGGS 38
>08_01_0108 - 791835-792398
Length = 187
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +3
Query: 417 SKGEKPSIRAMAHYVNHHPNQVFWGRGAVKHKFGTLKGAPDLELDGGKPRTWRERKGRKR 596
++G +A V + W R + G +G ++ + G + R+WR R+ R R
Sbjct: 62 ARGRAEVAAVLAEVVVADERRSSWRRLRRPRRRGGARGRAEVVVAGKRRRSWRRRRSRTR 121
Query: 597 KDR 605
+ R
Sbjct: 122 QRR 124
>01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296
Length = 416
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 552 GGKPRTWRERKGRKRKDR 605
GG+ TWRER+ KR++R
Sbjct: 18 GGRMPTWRERENNKRRER 35
>08_02_0417 -
16904476-16904662,16904846-16905029,16905150-16905897,
16906003-16906227,16906318-16906485,16906803-16907453
Length = 720
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -2
Query: 386 SCSKLEQHSTLSRSILL-IYKGFCRFRPIG*KMS*FNKNLTRILTNINAYNLPFAIAGA 213
S S + HS L+ I+ + C FR G K+ F+K L + +T +N +LP ++GA
Sbjct: 44 SLSNFKVHSRLAEWIMQKMNPEICEFRFRG-KVIVFDKLLVQKITGLNDGDLPVKLSGA 101
>07_03_1055 -
23612968-23613038,23614625-23614763,23614854-23615021,
23615341-23616045,23616647-23616847
Length = 427
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -2
Query: 386 SCSKLEQHSTLSRSILL-IYKGFCRFRPIG*KMS*FNKNLTRILTNINAYNLPFAIAGA 213
S S + HS L+ I+ + C FR G K+ F+K L + +T +N +LP ++GA
Sbjct: 129 SLSNFKVHSRLAEWIMQKMNPEICEFRFRG-KVIMFDKLLVQKITGLNDGDLPVKLSGA 186
>11_04_0287 + 15796081-15796206,15796298-15796756
Length = 194
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +3
Query: 552 GGKPRTWRERKGRKRK 599
GG+ + WRERKGR+++
Sbjct: 176 GGRRQRWRERKGREKR 191
>07_01_0045 - 357463-357921
Length = 152
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 486 WGRGAVKHKFGTLKGAPDLELDGGKPRTWRERKGRKRKDR 605
W R + G +G ++ + G + R+WR R+ R R+ R
Sbjct: 50 WRRRRRPWRRGGARGRAEVVVAGKRRRSWRRRRSRTRQRR 89
>06_01_0193 -
1491710-1491739,1492194-1492319,1492631-1492766,
1493048-1493112,1493213-1493305,1493433-1493498,
1493763-1493843,1493977-1494032,1494692-1494780,
1495340-1495425,1495531-1495647,1496109-1496254,
1496665-1496725,1496831-1496914,1497028-1497135,
1497286-1497388,1497802-1497845,1498100-1498584,
1499417-1499603,1500150-1500362,1501066-1501323
Length = 877
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 486 WGRGAVKHKFGTLKGAPDLELDGGKPRTWRERKGRKRKDR 605
W R + G +G ++ + G + R+WR R+ R R+ R
Sbjct: 308 WRRRRRPWRRGGARGRAEVVVAGKRRRSWRRRRSRTRQRR 347
>06_01_0092 - 775290-775691
Length = 133
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -3
Query: 187 RASSLLRQLAKGGCAARR 134
RA+SLLRQL + GCAA +
Sbjct: 22 RAASLLRQLIEDGCAAAK 39
>04_03_0284 + 13896307-13896765
Length = 152
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 486 WGRGAVKHKFGTLKGAPDLELDGGKPRTWRERKGRKRKDR 605
W R + G +G ++ + G + R+WR R+ R R+ R
Sbjct: 50 WRRRRRPWRRGGARGRAEVVVAGKRRRSWRRRRSRTRQRR 89
>03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672
Length = 242
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 486 WGRGAVKHKFGTLKGAPDLELDGGKPRTWRERKGRKRKDR 605
W R + G +G ++ + G + R+WR R+ R R+ R
Sbjct: 140 WRRRRRPWRRGGARGRAEVVVAGKRRRSWRRRRSRTRQRR 179
>03_05_0358 -
23438416-23439282,23440116-23440163,23440343-23440382,
23440459-23440610
Length = 368
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 549 DGGKPRTWRERKGRKRKDR 605
DGG+P WRER+GR+ + R
Sbjct: 252 DGGRP-AWRERRGRRWRRR 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,477,606
Number of Sequences: 37544
Number of extensions: 463409
Number of successful extensions: 1321
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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