Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0781
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64853-4|AAB04977.1|  286|Caenorhabditis elegans Egg laying defe...    29   4.3  
AF283983-1|AAG13398.1|  286|Caenorhabditis elegans C2H2 zinc fin...    29   4.3  
AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U64853-4|AAB04977.1|  286|Caenorhabditis elegans Egg laying
           defective protein 46 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 612 LAPDPFAFFPSFHATFAAFPRQALNRGLPLGFRIYALRHLD 490
           LAP P    P+    F  FP Q+  R LP+  +   LR L+
Sbjct: 80  LAPQPLFQEPTIQKEFLPFPHQSRKRPLPIDPKKTKLRKLN 120


>AF283983-1|AAG13398.1|  286|Caenorhabditis elegans C2H2 zinc finger
           protein EGL-46 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 612 LAPDPFAFFPSFHATFAAFPRQALNRGLPLGFRIYALRHLD 490
           LAP P    P+    F  FP Q+  R LP+  +   LR L+
Sbjct: 80  LAPQPLFQEPTIQKEFLPFPHQSRKRPLPIDPKKTKLRKLN 120


>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 148 IPLSPAGVIAKRPAPIALPNS-CAPAM 225
           IP++PA V+A R  P ALP S C P +
Sbjct: 145 IPVAPAPVVAGRLIPQALPGSPCEPGV 171


>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 236 LPFAIAGAQLLGRAIGAGLFAITPAGE--RGMCCKAIKLGNARV 111
           L F+     L G++IGA L   T AGE   G   K +K G++RV
Sbjct: 761 LDFSSDSQYLRGQSIGAHLLFWTKAGEICDGTSVKDVKWGSSRV 804


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,561,721
Number of Sequences: 27780
Number of extensions: 370388
Number of successful extensions: 819
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)