Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0781
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66780.1 68414.m07591 MATE efflux family protein contains TIG...    30   1.3  
At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    30   1.7  
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    29   2.3  
At5g27010.1 68418.m03222 hypothetical protein                          28   7.0  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   7.0  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   7.0  
At5g59000.1 68418.m07391 zinc finger (C3HC4-type RING finger) fa...    27   9.2  
At3g57480.1 68416.m06399 zinc finger (C2H2 type, AN1-like) famil...    27   9.2  
At2g13440.1 68415.m01483 glucose-inhibited division family A pro...    27   9.2  
At1g27020.1 68414.m03294 expressed protein                             27   9.2  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   9.2  

>At1g66780.1 68414.m07591 MATE efflux family protein contains
           TIGRfam profile: TIGR00797: MATE efflux family protein,
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 485

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -2

Query: 260 LTNINAYNLPFAIAGA--QLLGRAIGAGLF 177
           LTN+  ++L F +AGA   L G+A GAG F
Sbjct: 81  LTNVTGFSLIFGLAGALETLCGQAFGAGQF 110


>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 346 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGR 447
           D+D  E CS+ E ES ++E  L +++A N++ GR
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGR 466


>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 402 TWTPTSK--GEKPSIRAMAHYVNHHPNQVFWGRGAVK 506
           T TPTS   G+K +++A  ++V   P  V W RG ++
Sbjct: 777 TATPTSTHGGKKKAVKAHFYWVTREPGSVEWFRGVME 813


>At5g27010.1 68418.m03222 hypothetical protein
          Length = 863

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 399 RTWTPTSKGEKPSIRAMAHYVNHHPNQVFWGRGAVKHKFGTL 524
           RT  P +K  K ++  +   + HHP ++   + A  HK   L
Sbjct: 74  RTGHPNAKVRKDALHGIKDLLKHHPAELLSNKYATTHKLREL 115


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 408 TPTSKGEKPSIRAMAHYVNHHP 473
           T +S+   PS+    HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 52  PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 216
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCA 630


>At5g59000.1 68418.m07391 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger) ;contains PROSITE
           PS00190: Cytochrome c family heme-binding site signature
          Length = 231

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 531 APDLEL-DGGKPRTWRERKGRKRKDRALG 614
           AP+ +L  GGK R  R RK RK+K +  G
Sbjct: 49  APEKQLHSGGKKRRTRRRKRRKKKKKKKG 77


>At3g57480.1 68416.m06399 zinc finger (C2H2 type, AN1-like) family
           protein contains Pfam domain, PF00096: Zinc finger, C2H2
           type; contains Pfam domain, PF01428: AN1-like Zinc
           finger
          Length = 249

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 628 YTCPGPSA--RSFRFLPFLSRHVRGFPPSSSKS 536
           ++C GP     SF F+ FLS + +  P SSS S
Sbjct: 135 HSCSGPKKPESSFSFMGFLSTNTKEAPASSSSS 167


>At2g13440.1 68415.m01483 glucose-inhibited division family A
           protein similar to GidA from Pseudomonas syringae
           [GI:10764670]; contains Pfam profile PF01134 Glucose
           inhibited division protein A
          Length = 723

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
 Frame = -3

Query: 574 RHVRGFP---PS---SSKSGAPFRVPNLC-FTAPR 491
           RH R FP   PS   SS S  PF  P LC F  PR
Sbjct: 14  RHFRSFPTIVPSLLFSSSSSIPFHSPRLCVFLRPR 48


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 105 WENPGVTQLNRLAAHPPFASW 167
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +1

Query: 334  IKRIDRDRVECCSSLEQESTIKERGLQRQRAK 429
            ++ +  + VE C +LE  ST+K+R +++ + +
Sbjct: 1340 LEGLTNELVEACKNLESRSTLKDREIEQLKGR 1371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,785,175
Number of Sequences: 28952
Number of extensions: 345228
Number of successful extensions: 846
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)