Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0777
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    28   1.2  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   8.4  

>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 292 IQCLPTSKLKLYKRSTRRNSY*SCTERQGRTGCRIGNTQIECSEPFDDDSS 140
           I+ L T ++ L ++ +R NS+ S T   G +         + S+P + DSS
Sbjct: 191 IKPLTTREIPLARKRSRLNSFNSSTSTSGSSSNVAAEVSNDASQPSNQDSS 241


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 362 LNSITRDDYLFLFNRPLRAASLKLSIKVIEH 454
           L  I RDD ++L +R +   S   ++ +IE+
Sbjct: 564 LGYIPRDDRIYLTDRDMNVVSYSFNLAIIEY 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,715
Number of Sequences: 5004
Number of extensions: 59935
Number of successful extensions: 150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)