Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0777
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0180 + 15367737-15367755,15368874-15369739                       29   5.0  
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671...    28   6.6  
03_02_0139 - 5844107-5844278,5844413-5844521,5844630-5844732,584...    28   8.7  
02_02_0663 - 12740733-12741104,12741260-12741326,12741709-127418...    28   8.7  

>09_04_0180 + 15367737-15367755,15368874-15369739
          Length = 294

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 252 EAHAETPINPVPNVKEEPDVELEIPKSSVPNPL 154
           EA  +  ++P P+   EPD+ELE P+   P P+
Sbjct: 106 EADPKPGLDPEPDTNVEPDLELE-PEPPPPRPM 137


>02_02_0095 +
           6716327-6716335,6717302-6717451,6717523-6717583,
           6717646-6717725,6717802-6717903,6717982-6718471,
           6718796-6719171,6720320-6720379,6720887-6721056,
           6721287-6721340,6721384-6721523,6722362-6722511,
           6722582-6722642,6722705-6722784,6722933-6723034,
           6723111-6723612,6724401-6724776,6725419-6725493,
           6726058-6726198,6726264-6726282
          Length = 1065

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 252 EAHAETPIN-PVPNVKEEPDVELEIPKSSVPNPL 154
           EA  E P   P P   E+P+ E E PK    NPL
Sbjct: 799 EAKKEAPKEAPKPKAAEKPEEEEEAPKPKPKNPL 832


>03_02_0139 -
           5844107-5844278,5844413-5844521,5844630-5844732,
           5844834-5844865,5845211-5845434,5845774-5845889,
           5845997-5846252,5846720-5846807,5846891-5846962,
           5847096-5847171,5847302-5847360,5848202-5848268,
           5848760-5848825,5850466-5850657
          Length = 543

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 89  HAVRFSVYATNFKIISNGNVGLRF 18
           HA   S+Y T +K   NG +G+ F
Sbjct: 280 HAAAASIYRTKYKATQNGQLGIAF 303


>02_02_0663 -
           12740733-12741104,12741260-12741326,12741709-12741809,
           12741852-12742273,12743678-12743685,12745164-12745396
          Length = 400

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 575 FFDFDIY---YQYRRCLMMKP*MIQRVLWCIYYD*HASCIYLQRVQSLLWKVSK 423
           FF   I+   Y Y  C++ +    +R L  IYYD HA+ ++     +LL ++ K
Sbjct: 225 FFSLRIFSHSYSYV-CILQQFEKQKRYLSLIYYDNHANMLFALHTNNLLLEIKK 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,808,253
Number of Sequences: 37544
Number of extensions: 359535
Number of successful extensions: 776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)