Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0777
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)                     28   8.9  
SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)              28   8.9  

>SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)
          Length = 586

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 506 VLWCIYYD*HASCIYLQRVQSL--LWKV 429
           +LWC ++  H   +YLQ  + L  LWK+
Sbjct: 396 ILWCFFFLWHGQALYLQPRKKLLRLWKL 423


>SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)
          Length = 1173

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 290  PVLTNEQAEALQTKHTPKLL-LILYRTSRKNRM 195
            P++ N   E       P LL L+ Y+TSRKNR+
Sbjct: 999  PIVRNRSQEKFGLTTKPGLLCLVRYKTSRKNRV 1031


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,410,371
Number of Sequences: 59808
Number of extensions: 446837
Number of successful extensions: 1671
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)