Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0777
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69662-2|CAA93498.1|  440|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF077542-1|AAC26295.2|  386|Caenorhabditis elegans Serpentine re...    29   4.5  

>Z69662-2|CAA93498.1|  440|Caenorhabditis elegans Hypothetical
           protein F56D5.2 protein.
          Length = 440

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = +2

Query: 548 TGNKYQNQRTPPTR*GKVCSRRGLKDKTSGAFVSSDASVLESRRRVPIFPMKYVLNNGYN 727
           T +KY N R    +     S+R LK  + G   SSD S  +S+ +     +K VLNNG N
Sbjct: 376 TSSKYYNGRNGGEKGSMERSQRSLK--SDGTQPSSDKSKSKSKSKSKKSLIKKVLNNGNN 433


>AF077542-1|AAC26295.2|  386|Caenorhabditis elegans Serpentine
           receptor, class w protein66 protein.
          Length = 386

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/80 (26%), Positives = 34/80 (42%)
 Frame = +1

Query: 40  FEIILKFVA*TENLTACISSAMRFLLNGARRCSHYCRRQRVRNTRFGYFQFYIRFFLDVR 219
           ++II   V   +  T  +S AM  L           RR     + FG     +RFF+ ++
Sbjct: 87  YDIIFLIVHPNDKCTPPLSYAMELLDYWLLSFQDITRRM---TSFFGVLMTIVRFFI-IK 142

Query: 220 YRINRSFGVCFVCRASACSL 279
           + +NR F      R + CS+
Sbjct: 143 FALNRKFDTISKARFAICSI 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,736,211
Number of Sequences: 27780
Number of extensions: 338052
Number of successful extensions: 867
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)