Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0777
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    29   2.4  
At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative ...    28   5.5  
At3g07020.2 68416.m00834 UDP-glucose:sterol glucosyltransferase ...    28   7.3  
At3g07020.1 68416.m00833 UDP-glucose:sterol glucosyltransferase ...    28   7.3  

>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 237 TPINPVPNVKEEPDVELEIPKSSVPNP 157
           TP  P P+V   PDV    P  SVP+P
Sbjct: 199 TPTPPTPSVPSPPDVTPTPPTPSVPSP 225



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 234 PINPVPNVKEEPDVELEIPKSSVPNP 157
           P  P P+V   PDV    P  SVP+P
Sbjct: 185 PPTPTPSVPSPPDVTPTPPTPSVPSP 210


>At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative
           similar to GT-2 factor [Arabidopsis thaliana GI:416490
          Length = 619

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = -1

Query: 350 LIGYIGHIASRHSELLADSNPVLTNEQAEALQTKHTPKLLLILYRTSRKNRM*NWKYPNR 171
           LI     I++ + +   D N + T+ +A  L  + + K+L I Y+ S K     W+  N+
Sbjct: 468 LINIRRSISNMNDDDHKDENSLSTSSKAVPLWERISKKMLEIGYKRSAKRCKEKWENINK 527

Query: 170 VFR 162
            FR
Sbjct: 528 YFR 530


>At3g07020.2 68416.m00834 UDP-glucose:sterol glucosyltransferase
           (UGT80A2) identical to UDP-glucose:sterol
           glucosyltransferase [Arabidopsis thaliana] GI:2462931;
           contains Pfam profile: PF03033 glycosyltransferase
           family 28 N-terminal domain
          Length = 637

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 231 INPVPNVKEEPDVELEIPKSSVPNPL 154
           +N +  VK +  VE E+P  ++P P+
Sbjct: 140 LNRIATVKHDGTVEFEVPADAIPQPI 165


>At3g07020.1 68416.m00833 UDP-glucose:sterol glucosyltransferase
           (UGT80A2) identical to UDP-glucose:sterol
           glucosyltransferase [Arabidopsis thaliana] GI:2462931;
           contains Pfam profile: PF03033 glycosyltransferase
           family 28 N-terminal domain
          Length = 637

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 231 INPVPNVKEEPDVELEIPKSSVPNPL 154
           +N +  VK +  VE E+P  ++P P+
Sbjct: 140 LNRIATVKHDGTVEFEVPADAIPQPI 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,350
Number of Sequences: 28952
Number of extensions: 303401
Number of successful extensions: 681
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)