Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0776
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...   118   6e-28
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    54   3e-08
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   1.9  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    27   3.4  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   4.4  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score =  118 bits (285), Expect = 6e-28
 Identities = 53/86 (61%), Positives = 66/86 (76%)
 Frame = +1

Query: 10  ANDITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSI 189
           +N++ M +FEQAIER  AG+EKKS VL P+E+  VA+H  G AVAGWF+++ DPLLKVSI
Sbjct: 524 SNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVAHHEAGHAVAGWFMEYVDPLLKVSI 583

Query: 190 IPRGKGLGYAQYLPKXQYLYSKNNYL 267
           IPR + LGYA YLPK QYL S+   L
Sbjct: 584 IPRAQALGYASYLPKDQYLMSRGQIL 609



 Score = 85.4 bits (202), Expect = 7e-18
 Identities = 41/85 (48%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
 Frame = +3

Query: 258 QLFDRMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAXAQIVHYGMNAKVGNVSFEM 431
           Q+ D+M M L GRVSEEIFFG  +IT+GA DD +K+T+ A A +  YGM+  VG +++  
Sbjct: 607 QILDQMGMALAGRVSEEIFFGPEKITSGASDDFQKVTRMAQAYVTQYGMSPTVGTIAY-- 664

Query: 432 PQPGEMVIDKPYSEKTAELIDSEVR 506
           P      + KP+SE TA++ID E+R
Sbjct: 665 PIDTRETVQKPFSEATAQMIDEEIR 689



 Score = 35.1 bits (77), Expect = 0.010
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = +2

Query: 503 QRLINNAXXXXXXXXXXXXPNIEKVAERLLKQEILSRDDMIGLLGPRPFPEK 658
           ++L+ +A              +E +A+RLL++E+++ +++  +LGPRP+  K
Sbjct: 689 RKLVKHAYERTKKLLLEHKQGLENIAQRLLQKEVITYNEVETILGPRPYAYK 740


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 25/75 (33%), Positives = 43/75 (57%)
 Frame = +1

Query: 7   LANDITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVS 186
           L+  ++M++ E + +R + G E+KS  + P+ + + AYH  G A+   F ++A    K +
Sbjct: 492 LSTAVSMRDLEWSKDRILMGAERKSAFITPENKLMTAYHEGGHALVALFTKNAMRPYKAT 551

Query: 187 IIPRGKGLGYAQYLP 231
           I+PRG  LG    LP
Sbjct: 552 IMPRGSSLGMTISLP 566



 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
 Frame = +3

Query: 252 QEQLFDRMCMTLGGRVSEEIFFGR--ITTGAQDDLKKITQSAXAQIVHYGMNAKVGNVSF 425
           +E+    + +T+GGR +EE+ +G+  IT+GA +D+ K TQ A   +  +GM+ ++G VS 
Sbjct: 575 REEYLAMLDVTMGGRAAEELLYGKDKITSGAHNDIDKATQVARRMVTEFGMSDRIGPVSL 634

Query: 426 EMPQPGEMVIDKPYSEKTAELIDSEVR 506
           E     EM      S  T  L++SE++
Sbjct: 635 E----AEM---DNLSPATRALVESEIK 654


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 99   VWLENIRFFLHTGDXSFDGLFEIFHCNI 16
            VW    RFF   G  SF  LFE+F C +
Sbjct: 1445 VWRATKRFFKQIG--SFSPLFEVFTCQV 1470


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 458 VNHHFTGLWHLERHISDFSVHTIVYNLR 375
           V HH + LW+L+  +SD  V +++Y+L+
Sbjct: 147 VAHHSSVLWYLQSELSD--VSSVLYHLQ 172


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -1

Query: 687 VPSPNSS*VLFSGNGLGPNSPIISSRLKISCFSNLSATFSM 565
           +P+ NSS  L + + L  +SPIISS L  +  S  + T S+
Sbjct: 544 IPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTPALTHSI 584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,315
Number of Sequences: 5004
Number of extensions: 51192
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)