Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0776
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0098 + 22373384-22373522,22373566-22373772,22373879-223739... 100 9e-22
01_06_1310 - 36176008-36176472,36176547-36176774,36177313-361780... 100 9e-22
06_03_1468 - 30354724-30354945,30359326-30359497,30359587-303597... 66 2e-11
01_05_0429 + 22070636-22070662,22071490-22071577,22071908-220721... 61 9e-10
01_05_0430 + 22078651-22078677,22079269-22079356,22079669-220799... 59 3e-09
06_03_1068 - 27341103-27341444,27341689-27341929,27342030-273423... 54 1e-07
02_05_0136 + 26174965-26175849,26176965-26177030,26177124-261772... 53 2e-07
06_01_0876 - 6712224-6712812,6713777-6715233 50 2e-06
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 50 2e-06
01_05_0540 + 23069954-23070103,23070170-23070251,23070298-230703... 33 0.16
12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956... 29 4.6
>05_05_0098 +
22373384-22373522,22373566-22373772,22373879-22373953,
22374611-22374744,22375189-22375674,22375854-22376621,
22377367-22377594,22378294-22378773
Length = 838
Score = 100 bits (240), Expect = 9e-22
Identities = 46/80 (57%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 ITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIPR 198
ITM++FE AI+R + G+EKK+ V+ ER VAYH G AVAGWFL+HA+PLLKV+I+PR
Sbjct: 582 ITMQHFESAIDRIIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPR 641
Query: 199 G-KGLGYAQYLPKXQYLYSK 255
G LG+AQY+P L +K
Sbjct: 642 GTAALGFAQYVPNENLLMTK 661
Score = 99.1 bits (236), Expect = 3e-21
Identities = 46/91 (50%), Positives = 64/91 (70%)
Frame = +3
Query: 237 SVFIQQEQLFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAXAQIVHYGMNAKVGN 416
++ + +EQLFD CMTLGGR +EE+ GRI+TGAQ+DL+K+T+ AQ+ YG + KVG
Sbjct: 656 NLLMTKEQLFDMTCMTLGGRAAEEVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSEKVGL 715
Query: 417 VSFEMPQPGEMVIDKPYSEKTAELIDSEVRD 509
+SF G + KPYS +TA +ID EVR+
Sbjct: 716 LSFPQRDDG-FEMTKPYSNQTASIIDDEVRE 745
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Frame = +2
Query: 566 IEKVAERLLKQEILSRDDMIGLLGPRPF--PEKSTYEEFGEG 685
+ K+AE LL++E+L +DD++ +LG RPF E + Y+ F +G
Sbjct: 765 VAKIAEMLLEKEVLHQDDLVRVLGERPFKASEPTNYDLFKQG 806
>01_06_1310 -
36176008-36176472,36176547-36176774,36177313-36178080,
36178250-36178732,36179883-36180010,36180539-36180607,
36180688-36180892,36181005-36181067
Length = 802
Score = 100 bits (240), Expect = 9e-22
Identities = 46/80 (57%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 ITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIPR 198
ITM++FE AI+R + G+EKK+ V+ ER VAYH G AVAGWFL+HA+PLLKV+I+PR
Sbjct: 551 ITMQHFESAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPR 610
Query: 199 G-KGLGYAQYLPKXQYLYSK 255
G LG+AQY+P L +K
Sbjct: 611 GTAALGFAQYVPNDNLLMTK 630
Score = 99.5 bits (237), Expect = 2e-21
Identities = 45/91 (49%), Positives = 66/91 (72%)
Frame = +3
Query: 237 SVFIQQEQLFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAXAQIVHYGMNAKVGN 416
++ + +EQLFD CMTLGGR +EE+ G+I+TGAQ+DL+K+T+ AQ+ YG + KVG
Sbjct: 625 NLLMTKEQLFDMTCMTLGGRAAEEVLIGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGL 684
Query: 417 VSFEMPQPGEMVIDKPYSEKTAELIDSEVRD 509
+SF + G + KPYS +TA +ID+EVR+
Sbjct: 685 LSFPQREDG-FEMSKPYSSQTASIIDTEVRE 714
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Frame = +2
Query: 566 IEKVAERLLKQEILSRDDMIGLLGPRPFP--EKSTYEEFGEG 685
+ ++AE LL++E+L +DD++ +LG RPF E + Y+ F +G
Sbjct: 734 VAQIAELLLEKEVLHQDDLVQVLGERPFKTLEPTNYDRFKQG 775
>06_03_1468 -
30354724-30354945,30359326-30359497,30359587-30359770,
30359865-30360111,30360817-30362052
Length = 686
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/79 (39%), Positives = 47/79 (59%)
Frame = +1
Query: 16 DITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIP 195
+I+ A+ER +AG EKK+ V+ ++R +VAYH G A+ G + DP+ K+SIIP
Sbjct: 459 EISKDEISDALERIIAGPEKKNAVVSEEKRRLVAYHEAGHALVGALMPEYDPVAKISIIP 518
Query: 196 RGKGLGYAQYLPKXQYLYS 252
RG+ G + P + L S
Sbjct: 519 RGQAGGLTFFAPSEERLES 537
Score = 62.1 bits (144), Expect = 4e-10
Identities = 33/90 (36%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Frame = +3
Query: 261 LFDRMCMTLGGRVSEEIFFGR--ITTGAQDDLKKITQSAXAQIVHYGMNAKVGNVSFEMP 434
L ++M + LGGRV+EE+ FG+ +TTGA +D ++++ A + +G + K+G V+ P
Sbjct: 545 LENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGP 604
Query: 435 --QP---GEMVIDKPYSEKTAELIDSEVRD 509
P +M K YS TA+++D+EVR+
Sbjct: 605 GGNPFLGQQMSSQKDYSMATADVVDAEVRE 634
>01_05_0429 +
22070636-22070662,22071490-22071577,22071908-22072168,
22072925-22073161,22073251-22073375,22074093-22074569,
22074655-22075569
Length = 709
Score = 60.9 bits (141), Expect = 9e-10
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +1
Query: 10 ANDITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSI 189
A +TM + E A +R + G E+KS V+ + R + AYH G A+ + A P+ K +I
Sbjct: 445 AKAVTMNDLEYAKDRIMMGSERKSAVISDESRKLTAYHEGGHALVAIHTEGARPVHKATI 504
Query: 190 IPRGKGLGYAQYLP-KXQYLYSKNNYL 267
+PRG+ LG LP K + +S+ L
Sbjct: 505 VPRGRTLGMVSQLPEKDETSFSRKQML 531
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Frame = +3
Query: 252 QEQLFDRMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAXAQIVHYGMNAKVGNVSF 425
++Q+ + +++ GRV+EE+ FG +T+GA D + T+ A A + YGM+ ++G VS+
Sbjct: 527 RKQMLAWLDVSMAGRVAEELIFGDSEVTSGASSDFQNATKMARAMVTKYGMSKQLGFVSY 586
Query: 426 EMPQPGEMVIDKPYSEKTAELIDSEVR 506
G K S +T LI+ EV+
Sbjct: 587 NYEDDG-----KSMSTETRLLIEQEVK 608
>01_05_0430 +
22078651-22078677,22079269-22079356,22079669-22079929,
22080693-22080950,22081036-22081160,22082375-22082851,
22082937-22083848
Length = 715
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/74 (37%), Positives = 41/74 (55%)
Frame = +1
Query: 10 ANDITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSI 189
A +TM + E A +R + G E+KS V+ + R + AYH G A+ + A P+ K +I
Sbjct: 452 AKAVTMNDLEYAKDRIMMGSERKSAVISDESRKLTAYHEGGHALVAIHTEGAHPVHKATI 511
Query: 190 IPRGKGLGYAQYLP 231
+PRG LG LP
Sbjct: 512 VPRGMALGMVAQLP 525
Score = 57.6 bits (133), Expect = 9e-09
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Frame = +3
Query: 246 IQQEQLFDRMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAXAQIVHYGMNAKVGNV 419
+ ++Q+ R+ + +GGRV+EE+ FG +T+GA D ++ T A A + YGM+ ++G V
Sbjct: 532 VSRKQMLARLDVCMGGRVAEELIFGDSEVTSGASSDFQQATAVARAMVTKYGMSKQLGFV 591
Query: 420 SFEMPQPGEMVIDKPYSEKTAELIDSEVR 506
S+ G K S +T LI+ EV+
Sbjct: 592 SYNYEDDG-----KSMSTETRLLIEKEVK 615
>06_03_1068 -
27341103-27341444,27341689-27341929,27342030-27342343,
27342672-27343805
Length = 676
Score = 54.0 bits (124), Expect = 1e-07
Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Frame = +3
Query: 246 IQQEQLFDRMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAXAQIVHYGMNAKVGNV 419
I ++QLF R+ LGGR +EEI FG +TTGA DL++IT A +V +GM + +G
Sbjct: 518 ISRQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMVVTFGM-SDIGPW 576
Query: 420 SF--EMPQPGE----MVIDKPYSEKTAELIDSEVR 506
S Q G+ M+ SEK AE ID+ V+
Sbjct: 577 SLMDSGAQSGDVIMRMMARNSMSEKLAEDIDTAVK 611
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +1
Query: 19 ITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIPR 198
I+ K + +I+R VAGME + + + +VAYH G A+ G DP+ KV++IPR
Sbjct: 442 ISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLIPR 500
Query: 199 GKGLGYAQYLP 231
G+ G ++P
Sbjct: 501 GQARGLTWFIP 511
>02_05_0136 +
26174965-26175849,26176965-26177030,26177124-26177258,
26177369-26177434,26177516-26177701,26177777-26177863,
26177985-26178098,26178174-26178298,26178375-26178483,
26179298-26179423,26179511-26179831,26180146-26180269,
26180405-26180529
Length = 822
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 228 TQXSVFIQQEQLFDRMCMTLGGRVSEEIFF-GRITTGAQDDLKKITQSAXAQIVHYGMNA 404
T+ + ++L R+ LGGR +EE+ GR++TGA DD+++ T A + YG+N
Sbjct: 654 TEDRYLLFVDELRGRLVTLLGGRAAEEVVLSGRVSTGALDDIRRATDMAYKAVAEYGLNQ 713
Query: 405 KVGNVS 422
++G +S
Sbjct: 714 RIGPIS 719
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Frame = +1
Query: 31 NFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADP----LLKVSIIPR 198
+F A+ER +AG+EKK L+ +E+ +VA H G AV G + + P + K+SI+PR
Sbjct: 581 DFICAVERSIAGIEKKHAKLKGNEKAVVARHEVGHAVVGTAVANLLPGQPRVEKLSILPR 640
Query: 199 -GKGLGYAQYLPKXQYLY 249
G LG+ P + Y
Sbjct: 641 SGGALGFTYTPPTTEDRY 658
>06_01_0876 - 6712224-6712812,6713777-6715233
Length = 681
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/71 (36%), Positives = 39/71 (54%)
Frame = +1
Query: 19 ITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIPR 198
IT+ + +I+R VAG+E S + + +VAYH G AV D + KV++IPR
Sbjct: 445 ITVSEIDDSIDRIVAGLEGTS-MTDGKSKMLVAYHEIGHAVCATLTAGHDEVQKVTLIPR 503
Query: 199 GKGLGYAQYLP 231
G+ G +LP
Sbjct: 504 GQARGLTWFLP 514
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 8/95 (8%)
Frame = +3
Query: 246 IQQEQLFDRMCMTLGGRVSEEIFFGR--ITTGAQDDLKKITQSAXAQIVHYGMNAKVGNV 419
+ ++Q+F + LGGR +EE+ FG +TTGA DL+++T+ A + +GM +++G
Sbjct: 522 VSRQQIFAGIVGGLGGRAAEEVVFGEPEVTTGAAGDLQQVTRVARRMVTAFGM-SEIGPW 580
Query: 420 SFEMP--QPGEMVI----DKPYSEKTAELIDSEVR 506
+ P Q G++V+ SE+ A ID+ VR
Sbjct: 581 ALAEPAAQGGDVVLRMLARSSMSERLAADIDAAVR 615
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = +3
Query: 228 TQXSVFIQQEQLFDRMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAXAQIVHYGMN 401
+Q I ++QL R+ + +GGRV+EE+ FG +TTGA++DL T+ A + + GM+
Sbjct: 638 SQDETSISKKQLLARLDVCMGGRVAEELIFGEDNVTTGARNDLHTATELAQYMVSNCGMS 697
Query: 402 AKVGNV 419
+G V
Sbjct: 698 DAIGPV 703
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 100 ERXIVAYHXXGXAVAGWFLQHADPLLKVSIIPRGKGLGYAQYLP 231
E + AYH G A+ Q A P+ K +I+PRG LG LP
Sbjct: 594 ELILTAYHESGHAIVALNTQGAHPIHKATILPRGSALGMVTQLP 637
>01_05_0540 +
23069954-23070103,23070170-23070251,23070298-23070355,
23071276-23071318,23072262-23073341,23073448-23073509,
23073759-23073855,23074703-23074984,23075073-23075147,
23075223-23075276,23075373-23075515,23076567-23076858
Length = 805
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 34 FEQAIERXVAGMEKKSNVLQPDE--RXIVAYHXXGXAVAGWFLQHADPLLKVSIIPRGKG 207
FE + + ++ + + +P + ++AYH G A+ Q A P+ + +++P G
Sbjct: 498 FESSKKDVLSSFQLDPELTEPHRLIKHLIAYHESGHAIVALHTQGAHPIHQATVLPHGLS 557
Query: 208 LG 213
LG
Sbjct: 558 LG 559
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +3
Query: 246 IQQEQLFDRMCMTLGGRVSEEIFFGR--ITTGAQDDL 350
I ++++ R+ + GG V+EE+ FG +T GA++DL
Sbjct: 572 ISKQKILARIDVCFGGAVAEELLFGEHTVTAGAKNDL 608
>12_01_0961 +
9566730-9566998,9567096-9567187,9567294-9567427,
9567542-9567591,9569026-9569100,9569179-9569734
Length = 391
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 289 PSVMHILSNSCSCCINTXLWVNI 221
P ++SNS SC +NT LW I
Sbjct: 200 PKCRQLISNSRSCTVNTVLWNTI 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,001,689
Number of Sequences: 37544
Number of extensions: 318796
Number of successful extensions: 796
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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