Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0776
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3115| Best HMM Match : AAA (HMM E-Value=0)                          95   4e-20
SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)                  30   2.0  
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)             28   8.1  
SB_30331| Best HMM Match : Amidase (HMM E-Value=0)                     28   8.1  

>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
          Length = 913

 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 46/80 (57%), Positives = 57/80 (71%)
 Frame = +3

Query: 255 EQLFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAXAQIVHYGMNAKVGNVSFEMP 434
           EQLFDRMCM LGGR +E   F RITTGA+DDL+K+T  A  QI+ YGMN +VGN+SF + 
Sbjct: 492 EQLFDRMCMALGGRAAEGKIFRRITTGAEDDLRKVTDMAYRQIITYGMNDRVGNISFPVK 551

Query: 435 QPGEMVIDKPYSEKTAELID 494
           +  E    KPYS+  + LID
Sbjct: 552 KSQEFG-KKPYSDHLSHLID 570



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 36/74 (48%), Positives = 51/74 (68%)
 Frame = +1

Query: 1   RILANDITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLK 180
           R+   ++  KNFE A+ER +AGMEK+++ + PDER IVAYH  G A+ GW L+H +PLLK
Sbjct: 350 RLNKKNVDTKNFEYAVERVIAGMEKRTHTMSPDERRIVAYHEAGHALVGWMLEHTEPLLK 409

Query: 181 VSIIPRGKGLGYAQ 222
           V    +G  +G+ Q
Sbjct: 410 VWQRTQGGWVGHIQ 423



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +1

Query: 121 HXXGXAVAGWFLQHADPLLKVSIIPR-GKGLGYAQYLPKXQYLYS 252
           H  G  V    ++H + LLKVSI+PR    LGYAQYLP  Q LY+
Sbjct: 448 HIQGGGVG--VVEHTELLLKVSIVPRTNASLGYAQYLPSDQKLYT 490



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
 Frame = +2

Query: 572 KVAERLLKQEILSRDD---MIGLLGPRPFPEK 658
           ++AE L+K+E+L+ DD   +IGL+ P+ F E+
Sbjct: 680 QLAEELIKKEVLNYDDISSLIGLILPKLFDEE 711


>SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1157

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 3    HISQRYYNEKFRTSHRKXRRRYG 71
            H  ++YYNEKFR ++   +R++G
Sbjct: 968  HFIRKYYNEKFRGTYEIFKRQFG 990


>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
          Length = 868

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 458 VNHHFTGLWHLERHISDFSVHTIVY 384
           V HHFTG+ HL  HI  +   T+ +
Sbjct: 596 VTHHFTGIPHLLSHILRYLTLTVTH 620


>SB_30331| Best HMM Match : Amidase (HMM E-Value=0)
          Length = 555

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 630 SPIISSRLKISCFSNLSATFSMLG 559
           +P++ S  K+ CF  LS+TF  +G
Sbjct: 424 TPVVGSLEKLHCFDTLSSTFVTIG 447


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,851,977
Number of Sequences: 59808
Number of extensions: 380748
Number of successful extensions: 756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)