Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0776
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 139 1e-33
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 91 9e-19
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 91 9e-19
AC132211-4|AAN01432.2| 238|Caenorhabditis elegans Hypothetical ... 66 2e-11
AC024789-1|AAK85500.1| 238|Caenorhabditis elegans Hypothetical ... 66 2e-11
AC084159-1|AAK39368.1| 223|Caenorhabditis elegans Hypothetical ... 64 7e-11
Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical pr... 61 8e-10
Z77131-3|CAB00855.1| 156|Caenorhabditis elegans Hypothetical pr... 28 7.2
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 139 bits (337), Expect = 1e-33
Identities = 63/86 (73%), Positives = 74/86 (86%)
Frame = +3
Query: 252 QEQLFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAXAQIVHYGMNAKVGNVSFEM 431
++QL DRMCMTLGGRV+EEIFFGRITTGAQDDL+K+TQ A +Q+V +GM+ KVG +SFE
Sbjct: 603 KDQLLDRMCMTLGGRVAEEIFFGRITTGAQDDLQKVTQMAYSQVVKFGMSEKVGPLSFET 662
Query: 432 PQPGEMVIDKPYSEKTAELIDSEVRD 509
P PGEM DKPYSE TA+LID EVRD
Sbjct: 663 PAPGEMAFDKPYSEATAQLIDQEVRD 688
Score = 138 bits (335), Expect = 3e-33
Identities = 64/85 (75%), Positives = 73/85 (85%)
Frame = +1
Query: 13 NDITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSII 192
++I+ K+FEQAIER VAGMEKK+ VLQ +E+ VAYH G A+AGWFLQHADPLLKVSII
Sbjct: 523 HEISNKHFEQAIERVVAGMEKKTQVLQKEEKKTVAYHEAGHAIAGWFLQHADPLLKVSII 582
Query: 193 PRGKGLGYAQYLPKXQYLYSKNNYL 267
PRGKGLGYAQYLPK QYLYSK+ L
Sbjct: 583 PRGKGLGYAQYLPKEQYLYSKDQLL 607
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/59 (49%), Positives = 38/59 (64%)
Frame = +2
Query: 509 LINNAXXXXXXXXXXXXPNIEKVAERLLKQEILSRDDMIGLLGPRPFPEKSTYEEFGEG 685
L+ NA +IE+VA RLL++EIL+R+DMI L+G RPF EK+TYEE G
Sbjct: 689 LVMNALRRTRDLLLEKRSDIERVALRLLEKEILNREDMIELVGKRPFVEKNTYEEMVSG 747
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 90.6 bits (215), Expect = 9e-19
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Frame = +1
Query: 19 ITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIPR 198
+T K+ E A++R +AG EK+S L +ER +VAYH G A+ GW L+H D LLKV+IIPR
Sbjct: 521 VTHKDMEYALDRVLAGSEKRSRSLVEEEREVVAYHEAGHALVGWMLEHTDALLKVTIIPR 580
Query: 199 -GKGLGYAQYLPKXQYLYSKN 258
LG+AQY P+ ++L+SK+
Sbjct: 581 TSAALGFAQYSPRDKHLFSKD 601
Score = 88.2 bits (209), Expect = 5e-18
Identities = 43/83 (51%), Positives = 60/83 (72%)
Frame = +3
Query: 252 QEQLFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAXAQIVHYGMNAKVGNVSFEM 431
+++LFDRMCM LGGR +E + FGR T+GAQDDL+K+T+SA AQ+ YGM++ VG +SF
Sbjct: 600 KDELFDRMCMMLGGRCAENLKFGRATSGAQDDLQKVTKSAYAQVKLYGMSSIVGPLSFPN 659
Query: 432 PQPGEMVIDKPYSEKTAELIDSE 500
+ ++ KPYS+K A D E
Sbjct: 660 TEGFQI---KPYSKKFASTFDQE 679
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 566 IEKVAERLLKQEILSRDDMIGLLGPRPFPEK 658
+E +A+ LLK+E+L+ +D+ L+G F +K
Sbjct: 702 LETIAQALLKREVLNYEDVKKLIGTPKFGDK 732
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 90.6 bits (215), Expect = 9e-19
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Frame = +1
Query: 19 ITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIPR 198
+T K+ E A++R +AG EK+S L +ER +VAYH G A+ GW L+H D LLKV+IIPR
Sbjct: 521 VTHKDMEYALDRVLAGSEKRSRSLVEEEREVVAYHEAGHALVGWMLEHTDALLKVTIIPR 580
Query: 199 -GKGLGYAQYLPKXQYLYSKN 258
LG+AQY P+ ++L+SK+
Sbjct: 581 TSAALGFAQYSPRDKHLFSKD 601
Score = 88.2 bits (209), Expect = 5e-18
Identities = 43/83 (51%), Positives = 60/83 (72%)
Frame = +3
Query: 252 QEQLFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAXAQIVHYGMNAKVGNVSFEM 431
+++LFDRMCM LGGR +E + FGR T+GAQDDL+K+T+SA AQ+ YGM++ VG +SF
Sbjct: 600 KDELFDRMCMMLGGRCAENLKFGRATSGAQDDLQKVTKSAYAQVKLYGMSSIVGPLSFPN 659
Query: 432 PQPGEMVIDKPYSEKTAELIDSE 500
+ ++ KPYS+K A D E
Sbjct: 660 TEGFQI---KPYSKKFASTFDQE 679
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 566 IEKVAERLLKQEILSRDDMIGLLGPRPFPEK 658
+E +A+ LLK+E+L+ +D+ L+G F +K
Sbjct: 702 LETIAQALLKREVLNYEDVKKLIGTPKFGDK 732
>AC132211-4|AAN01432.2| 238|Caenorhabditis elegans Hypothetical
protein Y108F1.1 protein.
Length = 238
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = +1
Query: 19 ITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKV 183
+T+K+ E A++R +AG EK+S L +ER +VAYH G A+ GW L+H D LLKV
Sbjct: 167 VTIKDMEYALDRVLAGSEKRSRSLVEEEREVVAYHEAGHALVGWMLEHTDALLKV 221
>AC024789-1|AAK85500.1| 238|Caenorhabditis elegans Hypothetical
protein Y47C4A.1 protein.
Length = 238
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = +1
Query: 19 ITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKV 183
+T+K+ E A++R +AG EK+S L +ER +VAYH G A+ GW L+H D LLKV
Sbjct: 167 VTIKDMEYALDRVLAGSEKRSRSLVEEEREVVAYHEAGHALVGWMLEHTDALLKV 221
>AC084159-1|AAK39368.1| 223|Caenorhabditis elegans Hypothetical
protein Y73B3A.21 protein.
Length = 223
Score = 64.5 bits (150), Expect = 7e-11
Identities = 27/40 (67%), Positives = 36/40 (90%)
Frame = +3
Query: 252 QEQLFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSA 371
+++LFDRMCM LGGR +E + FGRIT+GAQDDL+K+T+SA
Sbjct: 105 KDELFDRMCMMLGGRCAENLKFGRITSGAQDDLQKVTKSA 144
>Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical
protein M03C11.5 protein.
Length = 676
Score = 60.9 bits (141), Expect = 8e-10
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Frame = +3
Query: 246 IQQEQLFDRMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAXAQIVHYGMNAKVGNV 419
+ + Q+ + + +GGRV+EE+ FG ++TTGA DDL K TQ A + +GM+ KVG
Sbjct: 505 LTKAQMLATLDVMMGGRVAEELIFGDDKVTTGAADDLSKATQLAVQMVKVFGMSDKVGLR 564
Query: 420 SFEMPQPGEMVIDK--PYSEKTAELIDSEV 503
F Q E + K + +TAELID+E+
Sbjct: 565 DF-TAQDNESALVKVSDLAPQTAELIDAEI 593
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +1
Query: 10 ANDITMKNFEQAIERXVAGMEKKSNVLQPDE-RXIVAYHXXGXAVAGWFLQHADPLLKVS 186
A ++TM ++A +R + G + + +E AYH G + + + A PL KV+
Sbjct: 424 AVEVTMAYLDEARDRVLMGPARTGGRIPDEEANRNTAYHEAGHTLVSLYTKDATPLHKVT 483
Query: 187 IIPRGKGLGYAQYLP-KXQYLYSKNNYL 267
IIPRG+ LG+ LP K Y +K L
Sbjct: 484 IIPRGQSLGHTAMLPEKDSYQLTKAQML 511
>Z77131-3|CAB00855.1| 156|Caenorhabditis elegans Hypothetical
protein C54C6.4 protein.
Length = 156
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 636 PNSPIISSRLKIS--CFSNLSATFSMLGLCF 550
P SP + S L + C SN+ TFS + CF
Sbjct: 92 PKSPQLCSNLSLHYFCMSNIRMTFSFVYFCF 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,799,516
Number of Sequences: 27780
Number of extensions: 285699
Number of successful extensions: 669
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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