Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0776
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          26   0.29 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.68 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 464 WFVNHHFTGLWHLERHISDFSVHTIVYNLRXSALCYLF*VILSPCGYSSEEYLFTY 297
           W++NH +     L   I D  ++T  + LR +   +L         Y  EEYL+++
Sbjct: 208 WYLNHDYNLENKLNYFIEDIGLNTYYFFLRQAFPFWLPSKEYDLPDYRGEEYLYSH 263


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 464 WFVNHHFTGLWHLERHISDFSVHTIVYNLRXSALCYLF*VILSPCGYSSEEYLFTY 297
           W++NH +     L   I D  ++T  + LR +   +L         Y  EEYL+++
Sbjct: 208 WYLNHDYNLENKLIYFIEDIGLNTYYFFLRQAFPFWLPSKEYDLPDYRGEEYLYSH 263


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 315 FGRIT-TGAQDDLKKITQSAXAQIVHYGMN 401
           FG  T  GAQ DLK + Q A + +V  G++
Sbjct: 176 FGSWTYNGAQVDLKHMKQEAGSNLVAKGID 205


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 65  VWRKNLMFSNQTRGRL*RIMXXAMQLQV 148
           VW  +L FSN+  G    I+   + +++
Sbjct: 115 VWMPDLFFSNEKEGHFHNIIMPNVYIRI 142


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 65  VWRKNLMFSNQTRGRL*RIMXXAMQLQV 148
           VW  +L FSN+  G    I+   + +++
Sbjct: 115 VWMPDLFFSNEKEGHFHNIIMPNVYIRI 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,458
Number of Sequences: 438
Number of extensions: 3419
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)