Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0776
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 98 4e-21
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 98 6e-21
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 65 4e-11
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 65 4e-11
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 58 4e-09
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 56 2e-08
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 56 2e-08
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 56 2e-08
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 52 3e-07
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 52 3e-07
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 50 1e-06
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 36 0.019
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 30 1.7
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi... 28 5.0
At5g19870.1 68418.m02363 expressed protein contains Pfam profile... 28 6.7
At1g13750.1 68414.m01614 calcineurin-like phosphoesterase family... 28 6.7
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 27 8.8
At3g06280.1 68416.m00721 hypothetical protein 27 8.8
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 98.3 bits (234), Expect = 4e-21
Identities = 44/80 (55%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 ITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIPR 198
+TM +F+ AI+R + G+EKK+ V+ ER VAYH G AVAGWFL+HA+PLLKV+I+PR
Sbjct: 558 VTMAHFDSAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPR 617
Query: 199 G-KGLGYAQYLPKXQYLYSK 255
G LG+AQY+P L +K
Sbjct: 618 GTAALGFAQYVPNENLLMTK 637
Score = 94.3 bits (224), Expect = 7e-20
Identities = 45/91 (49%), Positives = 64/91 (70%)
Frame = +3
Query: 237 SVFIQQEQLFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAXAQIVHYGMNAKVGN 416
++ + +EQLFD CMTLGGR +E++ GRI+TGAQ+DL+K+T+ AQ+ YG + K+G
Sbjct: 632 NLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKIGL 691
Query: 417 VSFEMPQPGEMVIDKPYSEKTAELIDSEVRD 509
+SF PQ E KPYS +T +ID EVR+
Sbjct: 692 LSF--PQ-REDEFSKPYSNRTGAMIDEEVRE 719
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = +2
Query: 566 IEKVAERLLKQEILSRDDMIGLLGPRPFP--EKSTYEEFGEG 685
+ ++AE LL++E+L +DD+ +LG RPF E + Y+ F G
Sbjct: 739 VAQIAELLLEKEVLHQDDLTKVLGERPFKSGETTNYDRFKSG 780
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 97.9 bits (233), Expect = 6e-21
Identities = 44/80 (55%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 ITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIPR 198
+TM +FE AI+R + G+EKK+ V+ ER VAYH G AV GWFL+HA+PLLKV+I+PR
Sbjct: 552 VTMAHFESAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPR 611
Query: 199 G-KGLGYAQYLPKXQYLYSK 255
G LG+AQY+P L +K
Sbjct: 612 GTAALGFAQYVPNENLLMTK 631
Score = 97.1 bits (231), Expect = 1e-20
Identities = 45/91 (49%), Positives = 63/91 (69%)
Frame = +3
Query: 237 SVFIQQEQLFDRMCMTLGGRVSEEIFFGRITTGAQDDLKKITQSAXAQIVHYGMNAKVGN 416
++ + +EQLFD CMTLGGR +E++ G+I+TGAQ+DL+K+T+ AQ+ YG + KVG
Sbjct: 626 NLLMTKEQLFDMTCMTLGGRAAEQVLIGKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGL 685
Query: 417 VSFEMPQPGEMVIDKPYSEKTAELIDSEVRD 509
+SF P+ KPYS KT +ID EVRD
Sbjct: 686 LSFP-PRDDGYDFSKPYSNKTGAIIDEEVRD 715
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Frame = +2
Query: 566 IEKVAERLLKQEILSRDDMIGLLGPRPF--PEKSTYEEFGEG 685
+ ++AE LL++E+L +DD++ +LG RPF E + Y+ F G
Sbjct: 735 VAEIAELLLEKEVLHQDDLLKILGERPFKSAEVTNYDRFKSG 776
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/79 (37%), Positives = 47/79 (59%)
Frame = +1
Query: 16 DITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIP 195
+I+ A+ER +AG EKK+ V+ +++ +VAYH G A+ G + DP+ K+SIIP
Sbjct: 477 EISKDEISDALERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIP 536
Query: 196 RGKGLGYAQYLPKXQYLYS 252
RG+ G + P + L S
Sbjct: 537 RGQAGGLTFFAPSEERLES 555
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 7/90 (7%)
Frame = +3
Query: 261 LFDRMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAXAQIVHYGMNAKVGNVSF--- 425
L ++M + LGGRV+EE+ FG +TTGA +D ++++ A + +G + K+G V+
Sbjct: 563 LENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGA 622
Query: 426 -EMPQPGE-MVIDKPYSEKTAELIDSEVRD 509
P G+ M K YS TA+++D+EVR+
Sbjct: 623 GGNPFLGQSMSSQKDYSMATADVVDAEVRE 652
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/79 (37%), Positives = 47/79 (59%)
Frame = +1
Query: 16 DITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIP 195
+I+ A+ER +AG EKK+ V+ +++ +VAYH G A+ G + DP+ K+SIIP
Sbjct: 489 EISKDEISDALERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIP 548
Query: 196 RGKGLGYAQYLPKXQYLYS 252
RG+ G + P + L S
Sbjct: 549 RGQAGGLTFFAPSEERLES 567
Score = 62.1 bits (144), Expect = 3e-10
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Frame = +3
Query: 261 LFDRMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAXAQIVHYGMNAKVGNVSFEMP 434
L ++M + LGGRV+EE+ FG +TTGA +D ++++ A I +G + K+G V+ P
Sbjct: 575 LENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMIERFGFSKKIGQVAVGGP 634
Query: 435 -----QPGEMVIDKPYSEKTAELIDSEVRD 509
+M K YS TA+++D+EVR+
Sbjct: 635 GGNPFMGQQMSSQKDYSMATADIVDAEVRE 664
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 58.4 bits (135), Expect = 4e-09
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +3
Query: 246 IQQEQLFDRMCMTLGGRVSEEIFFGR--ITTGAQDDLKKITQSAXAQIVHYGMNAKVGNV 419
I ++Q+ R+ + +GGRV+EE+ FG +T+GA DL++ T+ A A + +GM+ +VG V
Sbjct: 529 ISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDLEQATKLARAMVTKFGMSKEVGLV 588
Query: 420 SFEMPQPGEMVIDKPYSEKTAELIDSEVR 506
+ G K S +T LI+SEV+
Sbjct: 589 AHNYDDNG-----KSMSTETRLLIESEVK 612
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = +1
Query: 10 ANDITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSI 189
+ D+TM + E A +R + G E+KS V+ + R + A+H G A+ + A P+ K +I
Sbjct: 449 SKDVTMSDLEFAKDRIMMGSERKSAVISDESRKLTAFHEGGHALVAIHTEGALPVHKATI 508
Query: 190 IPRGKGLGYAQYLP 231
+PRG LG LP
Sbjct: 509 VPRGMALGMVSQLP 522
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +3
Query: 255 EQLFDRMCMTLGGRVSEEIFF-GRITTGAQDDLKKITQSAXAQIVHYGMNAKVGNVS 422
++L R+ LGGR +EE+ + GRI+TGA DD+++ T A + YG+N K+G VS
Sbjct: 646 DELHGRLVTLLGGRAAEEVVYSGRISTGALDDIRRATDMAYKAVAEYGLNEKIGPVS 702
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Frame = +1
Query: 31 NFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGW----FLQHADPLLKVSIIPR 198
+F A+ER +AG+EKK+ L+ E+ +VA H G AV G L + K+SI+PR
Sbjct: 564 DFIHAVERSIAGIEKKTARLKGSEKAVVARHEAGHAVVGTAVASLLSGQSRVEKLSILPR 623
Query: 199 -GKGLGYAQYLP 231
G LG+ Y+P
Sbjct: 624 SGGALGFT-YIP 634
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +3
Query: 255 EQLFDRMCMTLGGRVSEEIFF-GRITTGAQDDLKKITQSAXAQIVHYGMNAKVGNVS 422
++L R+ LGGR +EE+ + GRI+TGA DD+++ T A + YG+N K+G VS
Sbjct: 642 DELLGRLVTLLGGRAAEEVVYSGRISTGAFDDIRRATDMAYKAVAEYGLNQKIGPVS 698
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Frame = +1
Query: 31 NFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQH---ADPLL-KVSIIPR 198
+F QA+ER +AG+EKKS L+ +E+ +VA H G AV G + + P + K+SI+PR
Sbjct: 560 DFIQAVERSIAGIEKKSARLKGNEKAVVARHEAGHAVVGTAVANLLTGQPRVEKLSILPR 619
Query: 199 -GKGLGYAQYLP 231
G LG+ Y+P
Sbjct: 620 TGGALGFT-YIP 630
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/71 (36%), Positives = 42/71 (59%)
Frame = +1
Query: 19 ITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIPR 198
IT+ + +I+R VAGME + ++ + IVAYH G A+ + DP+ KV+++PR
Sbjct: 451 ITLTEIDDSIDRIVAGMEG-TKMIDGKSKAIVAYHEVGHAICATLTEGHDPVQKVTLVPR 509
Query: 199 GKGLGYAQYLP 231
G+ G +LP
Sbjct: 510 GQARGLTWFLP 520
Score = 52.0 bits (119), Expect = 4e-07
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Frame = +3
Query: 246 IQQEQLFDRMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAXAQIVHYGMNAKVGNV 419
+ ++QLF R+ LGGR +E++ FG ITTGA DL+++T+ A + +GM +++G
Sbjct: 527 VSKQQLFARIVGGLGGRAAEDVIFGEPEITTGAAGDLQQVTEIARQMVTMFGM-SEIGPW 585
Query: 420 SFEMPQPGE------MVIDKPYSEKTAELIDSEVR 506
+ P + M+ SEK AE IDS V+
Sbjct: 586 ALTDPAVKQNDVVLRMLARNSMSEKLAEDIDSCVK 620
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +1
Query: 10 ANDITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSI 189
A ++ + E A +R V G E+K+ + D + + AYH G A+ + A P+ K +I
Sbjct: 583 AEKLSSEQLEFAKDRIVMGTERKTMFVSEDSKKLTAYHESGHAIVALNTKGAHPIHKATI 642
Query: 190 IPRGKGLGYAQYLP 231
+PRG LG LP
Sbjct: 643 MPRGSALGMVTQLP 656
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 246 IQQEQLFDRMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAXAQIVHYGMNAKVGNV 419
+ + QL R+ + +GGRV+EE+ FG ITTGA DL + T+ A + GM+ +G V
Sbjct: 663 VSKRQLLARLDVCMGGRVAEELIFGLDHITTGASSDLSQATELAQYMVSSCGMSEAIGPV 722
Query: 420 SFEMPQPGEM 449
+ +M
Sbjct: 723 HIKERPSSDM 732
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 52.4 bits (120), Expect = 3e-07
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Frame = +3
Query: 246 IQQEQLFDRMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAXAQIVHYGMNA----K 407
I ++QLF R+ LGGR +EEI FG +TTGA DL++IT A + +GM+
Sbjct: 531 ISKQQLFARIVGGLGGRAAEEIIFGDSEVTTGAVGDLQQITGLARQMVTTFGMSDIGPWS 590
Query: 408 VGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVR 506
+ + S + M+ SEK AE IDS V+
Sbjct: 591 LMDSSAQSDVIMRMMARNSMSEKLAEDIDSAVK 623
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/71 (36%), Positives = 40/71 (56%)
Frame = +1
Query: 19 ITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIPR 198
I+ K + +I+R VAGME + + + +VAYH G AV G D + KV++IPR
Sbjct: 455 ISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAVCGTLTPGHDAVQKVTLIPR 513
Query: 199 GKGLGYAQYLP 231
G+ G ++P
Sbjct: 514 GQARGLTWFIP 524
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/71 (35%), Positives = 40/71 (56%)
Frame = +1
Query: 19 ITMKNFEQAIERXVAGMEKKSNVLQPDERXIVAYHXXGXAVAGWFLQHADPLLKVSIIPR 198
I+ K + +I+R VAGME + + + +VAYH G A+ G D + KV++IPR
Sbjct: 448 ISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPR 506
Query: 199 GKGLGYAQYLP 231
G+ G ++P
Sbjct: 507 GQARGLTWFIP 517
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Frame = +3
Query: 246 IQQEQLFDRMCMTLGGRVSEEIFFG--RITTGAQDDLKKITQSAXAQIVHYGMNAKVGNV 419
I ++QLF R+ LGGR +EE+ FG +TTGA DL++IT A + +GM +++G
Sbjct: 524 ISKQQLFARIVGGLGGRAAEEVIFGESEVTTGAVSDLQQITGLAKQMVTTFGM-SEIGPW 582
Query: 420 S-FEMPQPGE----MVIDKPYSEKTAELIDSEVR 506
S + + + M+ SEK A ID+ V+
Sbjct: 583 SLMDSSEQSDVIMRMMARNSMSEKLANDIDTAVK 616
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 270 RMCMTLGGRVSEEIFFG-RITTGAQDDLKKITQSAXAQIV 386
+M + GGR +E + FG +T G +DDL+KIT+ A ++
Sbjct: 823 QMVVAHGGRCAERVVFGDNVTDGGKDDLEKITKIAREMVI 862
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 240 VFIQQEQLFDRMCMTLGGRVSEEIFFGRITTGAQDD 347
+F + QL R+ + LGGR +EE+ +G T+ A D
Sbjct: 748 MFGRLPQLLHRLQVLLGGRAAEEVIYGSDTSKASVD 783
>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 500
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 645 GLGPNSPIISSRLKI-SCFSNLSATFSMLGLCFVNKXVVC 529
G+GPN+ +S+ LKI C S L + + G C + K ++C
Sbjct: 123 GVGPNAATMSTLLKILGCLSLLHSGKEVHGFC-LRKNLIC 161
>At5g19870.1 68418.m02363 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 276
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 440 GLWHLERHISDFSVHTIVY 384
GLWHL HI FS+H Y
Sbjct: 18 GLWHLFNHIKIFSLHPKSY 36
>At1g13750.1 68414.m01614 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 613
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 431 HLERHISDFSVHTIVYNLRXSALCYLF*VILSPCGYSSEEYLFTYSTP 288
H ++ +S +VH I + L A +L G SE L YS+P
Sbjct: 25 HEDQPLSGIAVHKITFGLNEKAYVKASPTVLGSNGQHSELVLVQYSSP 72
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 639 GPNSPIISSRLKISCFSNLSATFSMLGLC 553
GP S + R + CFSN +A ++ LC
Sbjct: 319 GPTSNVRVERASLDCFSNGNAVDEVISLC 347
>At3g06280.1 68416.m00721 hypothetical protein
Length = 198
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 153 PTTCRSPFKSVYYT*RKRSWLRAIF 227
PTT +SPF ++Y+ ++ S+ R I+
Sbjct: 142 PTTLQSPFHALYFDPQRNSFRRVIY 166
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,857,951
Number of Sequences: 28952
Number of extensions: 262808
Number of successful extensions: 666
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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