Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0775
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702...    29   2.9  
04_04_0225 + 23745404-23747788                                         28   6.7  

>12_02_1133 -
           26368323-26369457,26369556-26369635,26370145-26370201,
           26370508-26370601,26371006-26371092,26371179-26371268,
           26371396-26371649
          Length = 598

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 132 PSGQQQSRAKHIEHKKSQTKATENNWRL 215
           P+G+++  A H +HKK Q K  + +WR+
Sbjct: 542 PAGKKKKEASHKQHKKPQRK-KDRSWRV 568


>04_04_0225 + 23745404-23747788
          Length = 794

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +1

Query: 142 NSSPVLNT*NIRSPKLKQRKIIGDCIVSSN*LLILM 249
           NS  ++NT +I+  K K+  I+G C++  + LL+L+
Sbjct: 432 NSLSIINTGSIKWKKDKKYWILGSCLLLGSFLLVLI 467


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,993,820
Number of Sequences: 37544
Number of extensions: 228921
Number of successful extensions: 395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)