Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0775
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3266| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_20885| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_3266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 121 QDVYLVANSSPVLNT*NIRSPKLKQRKIIGDCIVSSN*LLILM*FK 258
           +D+  +  +SPVL     R P+L   K I  C+ S   +LIL   K
Sbjct: 48  RDLIDIGTNSPVLRERLSREPELTLTKTINLCLASEQAILILFSIK 93


>SB_20885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 60  RLEI*FDTLRSRISPVLVPEARRIPSGQQQSRAKHIEHKKSQTKATENN 206
           R+++ F  L+  IS +L P+AR     Q      H++ + +  K  +NN
Sbjct: 134 RVDVHFYLLKDAISFLLAPKARHHSEIQYDGNVTHLKIQLAAVKLLDNN 182


>SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 495 PP--LVDLWDLKEYLLKFNMGLLSLFIWDLITVS 590
           PP  L D+  ++EY LK   G   +++W ++T S
Sbjct: 228 PPFSLEDMLKMREYCLKTVEGFKGMWLWSIVTFS 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,745,060
Number of Sequences: 59808
Number of extensions: 295843
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)