Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0774
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    32   0.092
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    27   3.5  
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy...    26   4.6  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +2

Query: 455  TEEYYEGNDRIQXYHTDVFRDSYFNNTIK-TVMSFRWIFQHCAEAQHYLFTDDDMYISVQ 631
            TE  Y G   +  Y  D   D     TI  TV +   I ++    Q  LF +   YI+  
Sbjct: 834  TESVYSGLFDLVEYGFDQLEDVSVPKTIVITVSASLCILRNVLSLQRVLFKNVVPYIAEL 893

Query: 632  TLLKYVSDVTTAKRKRRVLF 691
             + KY+ D+T ++R  + +F
Sbjct: 894  GISKYILDLTISRRAYKEVF 913


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 281 LSSMQCRQQTGFSHNSQVGYRPFRTQRCN--XKDLWKTTCPGL 403
           LS  QC +  GFSH + +  R FR + C    K  + T  P L
Sbjct: 2   LSEYQCLKNIGFSHKTVLKRRLFR-KECTPALKSFYSTQDPAL 43


>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = -1

Query: 380 ISLSNCISVSEMVYSRLDYYD*IRFVDDTALT 285
           ++++N +++ E +Y R+ Y D I FV++ A+T
Sbjct: 92  LAINNTVAL-ENIYERIKYPDDISFVENQAVT 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,916
Number of Sequences: 5004
Number of extensions: 50354
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)