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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0774
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0589 + 19022233-19022457,19022578-19022709,19023129-190232...    33   0.22 
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512...    33   0.22 
03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355...    32   0.51 
01_04_0046 - 15400890-15403097                                         30   1.6  
07_01_0684 - 5161218-5161427,5161509-5161616,5162217-5162390,516...    30   2.1  
09_04_0225 - 15855544-15855727,15855796-15856406                       29   2.7  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    29   2.7  
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    28   6.3  

>10_08_0589 +
           19022233-19022457,19022578-19022709,19023129-19023227,
           19023384-19023431,19023926-19023976,19024205-19024273,
           19024337-19024419,19024643-19024766,19024843-19024902,
           19024983-19025225,19025426-19025509,19025581-19025728,
           19025909-19025986,19025987-19026114,19026204-19026251,
           19026922-19027052,19027708-19027817,19028365-19028468,
           19028614-19028684,19029091-19029389,19029507-19029682
          Length = 836

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +2

Query: 527 NNTIKTVMSFRWIFQH-CAEAQHYLFTDDDMYISVQTLLKYVSDVTTAKRKRR 682
           N  I  + +F+  +QH   EAQ+Y+    +++ +++   K + D T+A+RKR+
Sbjct: 654 NALIMDMENFKQQYQHHLQEAQYYVMQSKELHNNLEVAQKNIIDHTSAQRKRK 706


>08_02_0801 +
           21349434-21349438,21349952-21349978,21351175-21351249,
           21351333-21351369,21351469-21351552,21351821-21351881,
           21351961-21352067,21352162-21352227,21352366-21352461
          Length = 185

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 219 YCL--DYRSNVYVERIIEIAIEVLGLHVIADTEKMVNIXKHQSEY 91
           YCL  D +  + +    E+   VLGL      +K+VN  KHQSEY
Sbjct: 93  YCLTEDKKKCIEIPVACELLNLVLGLQFRPQVDKLVNYLKHQSEY 137


>03_06_0354 -
           33333634-33333840,33334106-33334213,33335384-33335557,
           33335637-33335765,33335858-33336145,33336257-33336489,
           33336607-33337435
          Length = 655

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +3

Query: 312 DLVIIVKSAIDHFGHRDAIXKTYGKPHVQGYNVKTFFFLGVDNASSDVQKNITKEMTEFK 491
           ++ I + SA +HF  R A+ KT+     +  NV   FF+ + N+  +V   + KE   F 
Sbjct: 410 EIFIGILSAGNHFAERMAVRKTWMSAAQKSSNVVARFFVAL-NSRKEVNAELKKEAEFFG 468

Query: 492 XII 500
            I+
Sbjct: 469 DIV 471


>01_04_0046 - 15400890-15403097
          Length = 735

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 351 GHRDAIXKTYGKPHVQGYNVKTFFFLGVDNASSDV 455
           G  D+    + + H  G+    F F+GV NASSD+
Sbjct: 300 GEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDL 334


>07_01_0684 -
           5161218-5161427,5161509-5161616,5162217-5162390,
           5162515-5162643,5162722-5163009,5163114-5163346,
           5164235-5165060
          Length = 655

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +3

Query: 312 DLVIIVKSAIDHFGHRDAIXKTYGKPHVQGYNVKTFFFLGVDNASSDVQKNITKEMTEFK 491
           +L I + SA  HF  R A+ K++     +  N+   FF+ + N   +V   + +E   F+
Sbjct: 409 ELFIGILSAASHFAERMAVRKSWMMYTRKSTNIVARFFVAL-NGKKEVNAELKREAEFFQ 467

Query: 492 XII 500
            I+
Sbjct: 468 DIV 470


>09_04_0225 - 15855544-15855727,15855796-15856406
          Length = 264

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 323 NSQVGYRPFRTQRCNXKDLWKTTCPGLQR 409
           ++  G  P  T RC     W T+CPG  R
Sbjct: 167 STSAGATPSATTRCRSCTAWATSCPGTSR 195


>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
            32208604-32208814,32208927-32209108,32209196-32209297,
            32210002-32211187,32212103-32212499,32212551-32212582,
            32212885-32213157,32213307-32213394,32213486-32213723,
            32213824-32214034,32214119-32214300,32214378-32214479,
            32214801-32216224,32216751-32216822,32217688-32217719,
            32218186-32218263,32218425-32218512,32218608-32218845,
            32219060-32219162,32219386-32219558,32219644-32219745,
            32219825-32220606,32220659-32221012,32224055-32224140,
            32224250-32224400,32224534-32224771,32224876-32225119,
            32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 311  GFSHNSQVGYRPFRTQRCNXKDLWKTTCPGLQREDILLFGRGQCQFRCTEE 463
            GFS NS  G R     RC  +D +  T PG++  D  L+ R +    C +E
Sbjct: 1022 GFSLNSSRGCRRKEELRCGGQDHF-FTLPGMKVPDKFLYIRNRTFEECADE 1071


>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +2

Query: 323  NSQVGYRPFRTQRCNXKDLWKTTCPGLQREDILLFGRGQCQF---RCTEE 463
            N+  GYRP   Q C+ K L K     LQR  + +    Q  F   RC  E
Sbjct: 983  NTVDGYRPISLQNCSVKILSKVLATRLQRVFLRMIHLDQTGFLKGRCISE 1032


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,898
Number of Sequences: 37544
Number of extensions: 297120
Number of successful extensions: 632
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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