Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0774
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0589 + 19022233-19022457,19022578-19022709,19023129-190232... 33 0.22
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512... 33 0.22
03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355... 32 0.51
01_04_0046 - 15400890-15403097 30 1.6
07_01_0684 - 5161218-5161427,5161509-5161616,5162217-5162390,516... 30 2.1
09_04_0225 - 15855544-15855727,15855796-15856406 29 2.7
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 29 2.7
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 28 6.3
>10_08_0589 +
19022233-19022457,19022578-19022709,19023129-19023227,
19023384-19023431,19023926-19023976,19024205-19024273,
19024337-19024419,19024643-19024766,19024843-19024902,
19024983-19025225,19025426-19025509,19025581-19025728,
19025909-19025986,19025987-19026114,19026204-19026251,
19026922-19027052,19027708-19027817,19028365-19028468,
19028614-19028684,19029091-19029389,19029507-19029682
Length = 836
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 527 NNTIKTVMSFRWIFQH-CAEAQHYLFTDDDMYISVQTLLKYVSDVTTAKRKRR 682
N I + +F+ +QH EAQ+Y+ +++ +++ K + D T+A+RKR+
Sbjct: 654 NALIMDMENFKQQYQHHLQEAQYYVMQSKELHNNLEVAQKNIIDHTSAQRKRK 706
>08_02_0801 +
21349434-21349438,21349952-21349978,21351175-21351249,
21351333-21351369,21351469-21351552,21351821-21351881,
21351961-21352067,21352162-21352227,21352366-21352461
Length = 185
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 219 YCL--DYRSNVYVERIIEIAIEVLGLHVIADTEKMVNIXKHQSEY 91
YCL D + + + E+ VLGL +K+VN KHQSEY
Sbjct: 93 YCLTEDKKKCIEIPVACELLNLVLGLQFRPQVDKLVNYLKHQSEY 137
>03_06_0354 -
33333634-33333840,33334106-33334213,33335384-33335557,
33335637-33335765,33335858-33336145,33336257-33336489,
33336607-33337435
Length = 655
Score = 31.9 bits (69), Expect = 0.51
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 312 DLVIIVKSAIDHFGHRDAIXKTYGKPHVQGYNVKTFFFLGVDNASSDVQKNITKEMTEFK 491
++ I + SA +HF R A+ KT+ + NV FF+ + N+ +V + KE F
Sbjct: 410 EIFIGILSAGNHFAERMAVRKTWMSAAQKSSNVVARFFVAL-NSRKEVNAELKKEAEFFG 468
Query: 492 XII 500
I+
Sbjct: 469 DIV 471
>01_04_0046 - 15400890-15403097
Length = 735
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 351 GHRDAIXKTYGKPHVQGYNVKTFFFLGVDNASSDV 455
G D+ + + H G+ F F+GV NASSD+
Sbjct: 300 GEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDL 334
>07_01_0684 -
5161218-5161427,5161509-5161616,5162217-5162390,
5162515-5162643,5162722-5163009,5163114-5163346,
5164235-5165060
Length = 655
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 312 DLVIIVKSAIDHFGHRDAIXKTYGKPHVQGYNVKTFFFLGVDNASSDVQKNITKEMTEFK 491
+L I + SA HF R A+ K++ + N+ FF+ + N +V + +E F+
Sbjct: 409 ELFIGILSAASHFAERMAVRKSWMMYTRKSTNIVARFFVAL-NGKKEVNAELKREAEFFQ 467
Query: 492 XII 500
I+
Sbjct: 468 DIV 470
>09_04_0225 - 15855544-15855727,15855796-15856406
Length = 264
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 323 NSQVGYRPFRTQRCNXKDLWKTTCPGLQR 409
++ G P T RC W T+CPG R
Sbjct: 167 STSAGATPSATTRCRSCTAWATSCPGTSR 195
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 311 GFSHNSQVGYRPFRTQRCNXKDLWKTTCPGLQREDILLFGRGQCQFRCTEE 463
GFS NS G R RC +D + T PG++ D L+ R + C +E
Sbjct: 1022 GFSLNSSRGCRRKEELRCGGQDHF-FTLPGMKVPDKFLYIRNRTFEECADE 1071
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +2
Query: 323 NSQVGYRPFRTQRCNXKDLWKTTCPGLQREDILLFGRGQCQF---RCTEE 463
N+ GYRP Q C+ K L K LQR + + Q F RC E
Sbjct: 983 NTVDGYRPISLQNCSVKILSKVLATRLQRVFLRMIHLDQTGFLKGRCISE 1032
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,898
Number of Sequences: 37544
Number of extensions: 297120
Number of successful extensions: 632
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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