Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0774
(704 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44965| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_24354| Best HMM Match : Galactosyl_T (HMM E-Value=5.6e-23) 43 3e-04
SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25) 41 0.001
SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26) 40 0.002
SB_44966| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_17120| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_10898| Best HMM Match : Galactosyl_T (HMM E-Value=1.9e-22) 38 0.010
SB_24592| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_44855| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.042
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.098
SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07) 33 0.17
SB_15525| Best HMM Match : Galactosyl_T (HMM E-Value=1.1e-31) 33 0.30
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30) 33 0.30
SB_20666| Best HMM Match : Galactosyl_T (HMM E-Value=5.2e-05) 32 0.39
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26) 31 0.69
SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37) 31 1.2
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_48591| Best HMM Match : Galactosyl_T (HMM E-Value=2.1e-33) 30 2.1
SB_39802| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01) 29 4.9
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 29 4.9
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 28 8.5
>SB_44965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1114
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/45 (42%), Positives = 31/45 (68%)
Frame = +2
Query: 509 FRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLK 643
F D+Y N T+KT++ RW +HC +AQ+ L TD D +++V L++
Sbjct: 195 FLDTYRNLTLKTILILRWAKKHCPQAQYILKTDHDCFVNVLPLMR 239
>SB_24354| Best HMM Match : Galactosyl_T (HMM E-Value=5.6e-23)
Length = 396
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/52 (32%), Positives = 35/52 (67%)
Frame = +2
Query: 509 FRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYVSDVTT 664
F D+Y + ++K ++ W ++HC A++ L TDDD Y+++ +L+ ++S+ T
Sbjct: 187 FLDTYKHLSLKMLLGITWPYEHC-NAKYILKTDDDCYMNIVSLILWLSEYHT 237
>SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)
Length = 383
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/51 (29%), Positives = 31/51 (60%)
Frame = +2
Query: 500 TDVFRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYVS 652
T +R+ +FN + K M F W ++C+ L +DDD++++ +L+Y++
Sbjct: 201 TSEYREGFFNMSYKVAMGFEWAMRYCS-FDFMLKSDDDVFVNPYAMLQYLA 250
>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +2
Query: 500 TDVFRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYVS 652
T +R+ +FN + K M F W ++C L +DDD++++ +L+Y++
Sbjct: 130 TSEYREGFFNMSYKVAMGFEWAMRYC-PFDFMLKSDDDVFVNPYAMLQYLA 179
>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
Length = 308
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +2
Query: 500 TDVFRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYVS 652
T +R+ +FN + K M F W ++C L +DDD++++ +L+Y++
Sbjct: 126 TSEYREGFFNMSYKVAMGFEWAMRYC-PFDFMLKSDDDVFVNPYAMLQYLA 175
>SB_44966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 509 FRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYV 649
F DSY N K V+ RW C A + L TDDD YI+ L+ ++
Sbjct: 166 FEDSYSNLYKKMVLGIRWAHTFCT-ADYILKTDDDCYINAHALITWL 211
>SB_17120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +2
Query: 509 FRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYV 649
F +SY N K V+ W +C A + L TDDD Y+SVQ L+ ++
Sbjct: 166 FEESYPNLYKKMVLGIEWPQNNCP-ADYILKTDDDCYVSVQALITWL 211
>SB_10898| Best HMM Match : Galactosyl_T (HMM E-Value=1.9e-22)
Length = 301
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +2
Query: 509 FRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYVSDVTTAKRKRRVL 688
+ ++Y N +K +F+W Q + ++ L DDD+Y + + ++ +T KR L
Sbjct: 153 YEETYRNIVVKVFYAFKWALQF--KPKYILKVDDDVYAHIPRFVSWLRKSSTPKR----L 206
Query: 689 FAGYV 703
+AGYV
Sbjct: 207 YAGYV 211
>SB_24592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 36.3 bits (80), Expect = 0.024
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 509 FRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYV 649
FRD+Y N IKT MS RW + + L TDDD+Y+ + ++
Sbjct: 144 FRDTYNNLIIKTFMSHRWTV--TLKCKFVLKTDDDVYVRLNVFTHWL 188
>SB_44855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 35.5 bits (78), Expect = 0.042
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 509 FRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYV 649
F D+Y N +KT MS W + + ++ L TD+D+YI + L+ ++
Sbjct: 53 FNDTYNNLVVKTFMSHLWTLR--LKCKYVLKTDEDVYIRLPVLISWL 97
>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 34.3 bits (75), Expect = 0.098
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 509 FRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYV 649
F+D Y N IKT+MS W + + L DDD+YI V +++ ++
Sbjct: 856 FKDIYLNLIIKTMMSHLW--ASSLDCCYILKADDDVYIRVPSVIAWL 900
>SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)
Length = 194
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 509 FRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYV 649
F+D Y N IKT+MS W + + L DDD+YI V ++ ++
Sbjct: 6 FKDIYLNLIIKTMMSHLW--ASSLDCCYILKADDDVYIRVPRVIAWL 50
>SB_15525| Best HMM Match : Galactosyl_T (HMM E-Value=1.1e-31)
Length = 522
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 509 FRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYVSDV 658
F D+Y N IK M F+W ++ +++ L DDD YI + L + V
Sbjct: 268 FPDNYVNLIIKVYMGFKWAREN-VKSRFILKGDDDTYIYLPRLTNILQSV 316
>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
Length = 508
Score = 32.7 bits (71), Expect = 0.30
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +2
Query: 512 RDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYVSDVTTAKRKRRVLF 691
++SY N K SF+W + + ++ L DDD+Y++ LL ++ + + ++ L+
Sbjct: 200 KESYKNLVGKVQDSFKWALR--VQPKYILKADDDVYVNFPRLLNWLHEPSIPEK----LY 253
Query: 692 AGYV 703
AG+V
Sbjct: 254 AGFV 257
>SB_20666| Best HMM Match : Galactosyl_T (HMM E-Value=5.2e-05)
Length = 421
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +2
Query: 521 YFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYVSDVTTAKRKRRVLFAGY 700
Y N + K ++ ++W + A L TDDD Y+ + +L +SD + ++++ F+G+
Sbjct: 216 YRNLSHKMMLFYKWATDNVA-FNFTLKTDDDCYLDIDKILAALSDF-NLRNRQKIWFSGF 273
>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
Length = 492
Score = 31.5 bits (68), Expect = 0.69
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 509 FRDSYFNNTIKTVMSFRWI-FQHCAEAQHYLFTDDDMYISVQTLLKYV 649
F D+Y N +K ++ W Q+C + L DDD+YI++ LL ++
Sbjct: 116 FPDTYRNLVLKVFVALNWARTQNCT---YVLKADDDVYINIPRLLNWL 160
>SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)
Length = 646
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 512 RDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYV 649
R+SY N K SF W + Q+ L DDD+Y+++ L+ ++
Sbjct: 461 RESYRNLVEKIQGSFEWALS--VKPQYILKADDDVYVNMPKLISWL 504
>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1555
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 249 YKYYPYKFLSNYRQCSVVNKPDLVIIVKSAIDHFGHRDAIXKTYGKPHV 395
+ YYP N ++C ++NKPD IVK D F D T G+ H+
Sbjct: 1106 FGYYP-----NAKKCWIINKPDKESIVK---DTFKETDVKVTTQGQKHL 1146
>SB_48591| Best HMM Match : Galactosyl_T (HMM E-Value=2.1e-33)
Length = 336
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 509 FRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLLKYV 649
F D+Y N +K +F W + + + L D+D+YI++ L+ ++
Sbjct: 142 FTDTYMNLVLKVFAAFSW--ANKIDCDYILKADEDVYINLPQLVTWL 186
>SB_39802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 533 TIKTVMSFRWIFQHCAEAQHYLFTDDDMYISVQTLL 640
T + ++ + W++QH + ++L DDD ++ + LL
Sbjct: 6 TERLLLVWEWVYQHNIQFDYFLRIDDDHFLCLGRLL 41
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 311 RFVDDTALTIVAQ--ELVRVVFIGLTFGFCPSS 219
+ +D +T VAQ E + FIGLT GFCP S
Sbjct: 3750 QLLDADNVTTVAQLCENINDFFIGLTAGFCPLS 3782
>SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01)
Length = 361
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 300 VNKPD--LVIIVKSAIDHFGHRDAIXKTYGKPHVQGYNVKTFFFLG-VDNASSDVQKN 464
+NK + LV+IV SA RD+I ++Y K + FF G VDN++ D +N
Sbjct: 65 INKTEVLLVLIVSSAPRRKDRRDSIRQSYWKYCKTSQVICVFFTDGLVDNSTRDQLRN 122
>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 1414
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 311 RFVDDTALTIVAQ--ELVRVVFIGLTFGFCPSS 219
+ +D +T VAQ E + FIGLT GFCP S
Sbjct: 1054 QLLDAYNVTTVAQLCENINDFFIGLTAGFCPLS 1086
>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
Length = 844
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 138 ADTEKMVNIXKHQSEYNQFISVSPHYQS 55
AD K V KHQ Y Q++ P Y++
Sbjct: 604 ADVMKHVKARKHQKNYRQYVIDHPSYEA 631
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,648,442
Number of Sequences: 59808
Number of extensions: 376402
Number of successful extensions: 982
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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