Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0774
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81553-1|CAB04490.2| 327|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z83239-1|CAB05807.1| 325|Caenorhabditis elegans Hypothetical pr... 35 0.065
Z81492-10|CAB04029.2| 322|Caenorhabditis elegans Hypothetical p... 35 0.065
Z68752-6|CAD27607.1| 322|Caenorhabditis elegans Hypothetical pr... 35 0.065
AY038065-1|AAK72094.1| 322|Caenorhabditis elegans beta 1,3-gala... 35 0.065
AF024490-1|AAB70308.1| 334|Caenorhabditis elegans Hypothetical ... 34 0.086
AL009246-4|CAA15838.2| 368|Caenorhabditis elegans Hypothetical ... 32 0.46
Z81147-11|CAL69739.1| 323|Caenorhabditis elegans Hypothetical p... 31 0.80
AY533304-1|AAS21306.1| 359|Caenorhabditis elegans BRE-2 protein. 31 1.1
AL110487-12|CAB54430.2| 308|Caenorhabditis elegans Hypothetical... 31 1.1
U39849-7|AAA81049.2| 473|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF040643-6|AAT81200.1| 249|Caenorhabditis elegans Hypothetical ... 29 3.2
U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone... 29 4.3
U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone... 29 4.3
U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone... 29 4.3
AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear recep... 29 4.3
AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear recep... 29 4.3
AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear recep... 29 4.3
AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear recep... 29 4.3
AF016416-8|AAB65271.1| 388|Caenorhabditis elegans Hypothetical ... 29 4.3
Z77663-14|CAB01214.2| 568|Caenorhabditis elegans Hypothetical p... 28 5.7
AJ581300-1|CAE46113.1| 568|Caenorhabditis elegans flavin monoox... 28 5.7
Z81536-8|CAB04369.2| 352|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81056-6|CAB02906.1| 398|Caenorhabditis elegans Hypothetical pr... 28 7.5
>Z81553-1|CAB04490.2| 327|Caenorhabditis elegans Hypothetical
protein F56H6.1 protein.
Length = 327
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 512 RDSYFNNTIKTVMSFRWIFQHCAEA-QHYLFTDDDMYISVQTLLKYVSDVTTAKRKRRVL 688
+DSY++ KT F + + H +++ YL DDD Y ++ L +Y+S + K L
Sbjct: 132 KDSYYDLFRKTTFGFYYSYMHISKSFDWYLKADDDTYFAMDHLKEYLSTLDPTK----PL 187
Query: 689 FAGYV 703
+ GYV
Sbjct: 188 YLGYV 192
>Z83239-1|CAB05807.1| 325|Caenorhabditis elegans Hypothetical
protein T09F5.1 protein.
Length = 325
Score = 34.7 bits (76), Expect = 0.065
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +3
Query: 300 VNKPDLVIIVKSAIDHFGHRDAIXKTYGKPHVQGYNVKTFFFLGVDNASSDVQKNITKEM 479
+N P++++I S D F R+AI KT+ + +FF +G+ + + + ++I
Sbjct: 76 LNNPEILLIATSRPDDFSRRNAIRKTWMNQKTN--QITSFFMVGLSSKTDEKVRDIVMRE 133
Query: 480 TEFKXIIQMSSV 515
E I ++S+
Sbjct: 134 AELYRDIVVTSL 145
>Z81492-10|CAB04029.2| 322|Caenorhabditis elegans Hypothetical
protein E03H4.3 protein.
Length = 322
Score = 34.7 bits (76), Expect = 0.065
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 515 DSYFNNTIKTVMSFRWIFQHCAEA-QHYLFTDDDMYISVQTLLKYVSDVTTAKRKRRVLF 691
DS+F+ K++ F + + H + + YL DDD Y ++ L +Y++ + +K L+
Sbjct: 133 DSFFDLFRKSIFGFYYSYMHISNSFDWYLKADDDTYFAMDHLREYLNTLDPSK----PLY 188
Query: 692 AGYV 703
GYV
Sbjct: 189 LGYV 192
>Z68752-6|CAD27607.1| 322|Caenorhabditis elegans Hypothetical
protein T12G3.8 protein.
Length = 322
Score = 34.7 bits (76), Expect = 0.065
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +3
Query: 276 SNYRQCSVVNKPD--LVIIVKSAIDHFGHRDAIXKTYGK-PHVQGYNVKTFFFLG-VDNA 443
+ Y QC ++II+KS+ + R+++ KT+G + G V F +G V+N
Sbjct: 64 TKYPQCKFSGNGQKIIIIIIKSSAKNGPMRESVRKTWGVFRMIDGVEVMPIFIVGRVEN- 122
Query: 444 SSDVQKNITKEMTEFKXIIQMSSVTVISTTPLK 542
++ + I E ++K I+ +S + LK
Sbjct: 123 -MEIMRRIDVESEKYKDILAISDIDSYRNNTLK 154
>AY038065-1|AAK72094.1| 322|Caenorhabditis elegans beta
1,3-galactosyltransferaseBRE-5 protein.
Length = 322
Score = 34.7 bits (76), Expect = 0.065
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +3
Query: 276 SNYRQCSVVNKPD--LVIIVKSAIDHFGHRDAIXKTYGK-PHVQGYNVKTFFFLG-VDNA 443
+ Y QC ++II+KS+ + R+++ KT+G + G V F +G V+N
Sbjct: 64 TKYPQCKFSGNGQKIIIIIIKSSAKNGPMRESVRKTWGVFRMIDGVEVMPIFIVGRVEN- 122
Query: 444 SSDVQKNITKEMTEFKXIIQMSSVTVISTTPLK 542
++ + I E ++K I+ +S + LK
Sbjct: 123 -MEIMRRIDVESEKYKDILAISDIDSYRNNTLK 154
>AF024490-1|AAB70308.1| 334|Caenorhabditis elegans Hypothetical
protein C02H6.1 protein.
Length = 334
Score = 34.3 bits (75), Expect = 0.086
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 515 DSYFNNTIKTVMSFRWIFQHCA-EAQHYLFTDDDMYISVQTLLKYVSDVTTAKRKRRVLF 691
DSY++ KT++SF + + + + + YL DDD Y + L +Y+ + +K LF
Sbjct: 140 DSYYDLFRKTLLSFYYSYTYISKDFDWYLKADDDNYFMIDHLKEYLDTLDASK----PLF 195
Query: 692 AGY 700
GY
Sbjct: 196 LGY 198
>AL009246-4|CAA15838.2| 368|Caenorhabditis elegans Hypothetical
protein C47F8.5 protein.
Length = 368
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = +3
Query: 264 YKFLSNYRQCSVVNKPDLVIIVKSAIDHFGHRDAIXKTYGKPH----VQGYNVKTFFFLG 431
YK+L V+ PD++++V S D F R+ + KT+ + V+ +K F +G
Sbjct: 86 YKWLYLPETDIVLRSPDILMMVASRTDSFARRNVLRKTWMNKNYSEIVRDGRMKALFLVG 145
Query: 432 VDNASSDVQKNITKEMTEFKXIIQMSSVTVISTTPLK 542
+ + V++ + +E + ++ + P K
Sbjct: 146 MVSEDYRVRRIVMEEAKLYGDMVVIDLEDTYDDLPFK 182
>Z81147-11|CAL69739.1| 323|Caenorhabditis elegans Hypothetical
protein T09E11.12 protein.
Length = 323
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 515 DSYFNNTIKTVMSFRWIFQHCAEA-QHYLFTDDDMYISVQTLLKYVSDVTTAK 670
DSY + K++ F + + H +++ YL DDD Y ++ L +Y++ + +K
Sbjct: 133 DSYSDLFRKSIFGFYYSYVHISKSFDWYLKADDDTYFAMDHLREYLNTLDPSK 185
>AY533304-1|AAS21306.1| 359|Caenorhabditis elegans BRE-2 protein.
Length = 359
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Frame = +3
Query: 195 HSTDSPSNTRRAKAEC*TYKYYPYKFLSNYRQCSVVNKPDLVIIVKSAIDHFGHRDAIXK 374
++ D SN R A + + Y + L N+ + S ++++IV S D+F R+ + K
Sbjct: 55 NTIDDGSNFRIAFTDI--QQNYTWLHLPNFLENS-----EILMIVSSNCDNFARRNILRK 107
Query: 375 TYGKPH----VQGYNVKTFFFLGVDNASSDVQKNITKEMTEFKXII 500
T+ P + +K F +G++ A + + +E F +I
Sbjct: 108 TWMNPENSQIIGDGRMKALFLVGINGADEKLNAVVLEEAKVFGDMI 153
>AL110487-12|CAB54430.2| 308|Caenorhabditis elegans Hypothetical
protein Y39E4B.9 protein.
Length = 308
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Frame = +3
Query: 195 HSTDSPSNTRRAKAEC*TYKYYPYKFLSNYRQCSVVNKPDLVIIVKSAIDHFGHRDAIXK 374
++ D SN R A + + Y + L N+ + S ++++IV S D+F R+ + K
Sbjct: 55 NTIDDGSNFRIAFTDI--QQNYTWLHLPNFLENS-----EILMIVSSNCDNFARRNILRK 107
Query: 375 TYGKPH----VQGYNVKTFFFLGVDNASSDVQKNITKEMTEFKXII 500
T+ P + +K F +G++ A + + +E F +I
Sbjct: 108 TWMNPENSQIIGDGRMKALFLVGINGADEKLNAVVLEEAKVFGDMI 153
>U39849-7|AAA81049.2| 473|Caenorhabditis elegans Hypothetical
protein C06A8.2 protein.
Length = 473
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 452 CTEEYYEGNDRIQXYHTDVFRDSYFNNTIKTVMSFRWIFQHCAEAQHYLFTDDDMY 619
C + G++RI+ + DVFRD +F +T++ +R C E YL MY
Sbjct: 23 CNKFISMGSNRIRDF-ADVFRDMHF----ETILHYRLNPAECLEFTEYLLQHAAMY 73
>AF040643-6|AAT81200.1| 249|Caenorhabditis elegans Hypothetical
protein F14D2.13 protein.
Length = 249
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 571 LKDPAKGHDRFNGVVEITVTEDICMIXLNSVISFVIFFCTSELALSTPK-KKNVFT 407
L+D D VE+ VT+D+C++ NS SF + + T + +K+ FT
Sbjct: 85 LRDAIDSTDPGFKTVEVRVTDDMCLLWANSQSSFYSMTVSGGIIKGTKRSEKSEFT 140
>U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform d protein.
Length = 312
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 482 CHFLRNILLYI*TGIVHAQKEECLHVVALDMWFSISLSNCI 360
C LR ++ TG+ HA CL D+ +SL+N I
Sbjct: 189 CQELRRCIIPEVTGVTHALTSPCLLFETTDLKVDVSLTNTI 229
>U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform c protein.
Length = 440
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 482 CHFLRNILLYI*TGIVHAQKEECLHVVALDMWFSISLSNCI 360
C LR ++ TG+ HA CL D+ +SL+N I
Sbjct: 189 CQELRRCIIPEVTGVTHALTSPCLLFETTDLKVDVSLTNTI 229
>U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform a protein.
Length = 445
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 482 CHFLRNILLYI*TGIVHAQKEECLHVVALDMWFSISLSNCI 360
C LR ++ TG+ HA CL D+ +SL+N I
Sbjct: 194 CQELRRCIIPEVTGVTHALTSPCLLFETTDLKVDVSLTNTI 234
>AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 436
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 482 CHFLRNILLYI*TGIVHAQKEECLHVVALDMWFSISLSNCI 360
C LR ++ TG+ HA CL D+ +SL+N I
Sbjct: 185 CQELRRCIIPEVTGVTHALTSPCLLFETTDLKVDVSLTNTI 225
>AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 445
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 482 CHFLRNILLYI*TGIVHAQKEECLHVVALDMWFSISLSNCI 360
C LR ++ TG+ HA CL D+ +SL+N I
Sbjct: 194 CQELRRCIIPEVTGVTHALTSPCLLFETTDLKVDVSLTNTI 234
>AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 482 CHFLRNILLYI*TGIVHAQKEECLHVVALDMWFSISLSNCI 360
C LR ++ TG+ HA CL D+ +SL+N I
Sbjct: 189 CQELRRCIIPEVTGVTHALTSPCLLFETTDLKVDVSLTNTI 229
>AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 482 CHFLRNILLYI*TGIVHAQKEECLHVVALDMWFSISLSNCI 360
C LR ++ TG+ HA CL D+ +SL+N I
Sbjct: 189 CQELRRCIIPEVTGVTHALTSPCLLFETTDLKVDVSLTNTI 229
>AF016416-8|AAB65271.1| 388|Caenorhabditis elegans Hypothetical
protein F29A7.1 protein.
Length = 388
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 443 GIVHAQKEECLHVVALDMWFSISLSNCISVSE 348
G+V EE H+V LD+ ++ L NC V E
Sbjct: 310 GLVWTFVEESCHIVILDIHGAVGLENCKKVCE 341
>Z77663-14|CAB01214.2| 568|Caenorhabditis elegans Hypothetical
protein F53F4.5 protein.
Length = 568
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 339 IDHFGHRDAIXKTYGKPHVQGYNVKTFFFLGVDNASSDVQKNITK 473
+D+F + + Y + GY K F LG+ N++ D+ +I K
Sbjct: 152 LDNF--KGKVVHAYDYTNTSGYEGKDVFLLGIGNSALDIAVDIAK 194
>AJ581300-1|CAE46113.1| 568|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 568
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 339 IDHFGHRDAIXKTYGKPHVQGYNVKTFFFLGVDNASSDVQKNITK 473
+D+F + + Y + GY K F LG+ N++ D+ +I K
Sbjct: 152 LDNF--KGKVVHAYDYTNTSGYEGKDVFLLGIGNSALDIAVDIAK 194
>Z81536-8|CAB04369.2| 352|Caenorhabditis elegans Hypothetical
protein F40D4.11 protein.
Length = 352
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -3
Query: 207 YRSNVYVERIIEIAIEVLGLHVIADTEKMVNIXKH 103
Y + Y ++ + + I++L LH I + ++ + KH
Sbjct: 283 YSTGYYTQKSMNLVIDILALHGIGEGIAIITVHKH 317
>Z81056-6|CAB02906.1| 398|Caenorhabditis elegans Hypothetical
protein F09F3.10 protein.
Length = 398
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 416 ILLFGRGQCQFRCTEEYYEGNDRIQXYHTDVFRDSYFNNTIKTVMSF 556
ILL G +C + + +D Y D++ S+FNN + F
Sbjct: 336 ILLLGNIRCAVKLVYNQTKVSDLFNAYKFDLYISSFFNNALTVSNKF 382
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,600,700
Number of Sequences: 27780
Number of extensions: 285625
Number of successful extensions: 832
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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