Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0774
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21060.1 68417.m03045 galactosyltransferase family protein co...    31   0.98 
At3g29250.1 68416.m03670 short-chain dehydrogenase/reductase (SD...    27   9.2  

>At4g21060.1 68417.m03045 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 741

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 327 VKSAIDHFGHRDAIXKTYGK-PHVQGYNVKTFFFLGVDNASSDVQKNITKEMTEFKXII 500
           V SA +HF  R A+ KT+ + P ++  +V   FF+ + N   +V   + KE   F  I+
Sbjct: 499 VLSATNHFSERMAVRKTWMQHPSIKSSDVVARFFVAL-NPRKEVNAMLKKEAEYFGDIV 556


>At3g29250.1 68416.m03670 short-chain dehydrogenase/reductase (SDR)
           family protein similar to
           3-beta-hydroxysteroiddehydrogenase GI:15983819 from
           [Digitalis lanata]; contains Pfam profile: PF00106 short
           chain dehydrogenase
          Length = 379

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 569 QHCAEAQHYLFTDDDMYISVQTLL 640
           +H AEA  +L +DD +YIS Q L+
Sbjct: 343 RHIAEAALFLASDDSVYISGQNLV 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,484,190
Number of Sequences: 28952
Number of extensions: 254069
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)