Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0773
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K8E2 Cluster: Putative uncharacterized protein; n=1; ...    37   0.54 
UniRef50_Q650B3 Cluster: Polysaccharide biosynthesis protein; n=...    33   6.7  
UniRef50_UPI00006CC160 Cluster: hypothetical protein TTHERM_0022...    33   8.8  

>UniRef50_A5K8E2 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 1285

 Score = 36.7 bits (81), Expect = 0.54
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -1

Query: 198 EQIMQILA*LRYCYALGFGINKNSTGVQLETVIALRTLKTLHKHFKILNTL 46
           E+++Q +  LR C+ + F +N  STG  +  +  + T K  H HFK+ N L
Sbjct: 175 EKLVQFIT-LRKCFTINFSLNLESTGAPIILMTEIDTQKN-HVHFKVNNNL 223


>UniRef50_Q650B3 Cluster: Polysaccharide biosynthesis protein; n=8;
           Bacteroidales|Rep: Polysaccharide biosynthesis protein -
           Bacteroides fragilis
          Length = 510

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 199 FVLFQNIKSEDPVRLYANSPPRAGSDLLLLLFTILC 306
           F  F N   EDPV++YANS    G   + L+F ILC
Sbjct: 80  FFRFANKSEEDPVKVYANSLISVGG--ISLIFAILC 113


>UniRef50_UPI00006CC160 Cluster: hypothetical protein
           TTHERM_00220970; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00220970 - Tetrahymena
           thermophila SB210
          Length = 900

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = +2

Query: 125 VEFLFIPNPSA*QYLNQANICIICSLCYFKISNQRILCDSMQTHLLER 268
           ++ +   N +  QY+N  N+CI+C+  Y+   NQ +   + Q +++ +
Sbjct: 260 IKIICTSNCATCQYINSNNVCILCNSGYYLQDNQCVANSNCQNNIVTK 307


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,069,180
Number of Sequences: 1657284
Number of extensions: 12753427
Number of successful extensions: 24758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24745
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)