Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0773
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    26   5.9  
SPBC409.21 |sec66||ER protein translocation subcomplex subunit S...    25   7.8  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   7.8  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   7.8  
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    25   7.8  

>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +1

Query: 388 RLXKIIVRVVSNLQLYILCLNIYIRC*YXTKHKRIVSSFEY---PI--VQSITCCVYANV 552
           RL  II+ +     ++I+C    +RC Y   H   +    +   P+  +  +T   Y  +
Sbjct: 331 RLEPIIMELERQGDVFIICHQAILRCIYGYYHNLSLEELPFINVPLHTIIKLTPMTYETI 390

Query: 553 ERRLSGTVTSYS 588
           E R++  +++ S
Sbjct: 391 EERVTVPISAVS 402


>SPBC409.21 |sec66||ER protein translocation subcomplex subunit
           Sec66 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 383 LTEIPKNLNKYSHSWETHSMLY 318
           +  IPK+++  S  W+T  +LY
Sbjct: 153 IDNIPKDIDSISQRWQTEKILY 174


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 82  FKCSKCYYSFKLYPGRIFIYPE 147
           F   K  Y  + YPGR+F  PE
Sbjct: 593 FAAEKFMYIMERYPGRVFSKPE 614


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -2

Query: 581  LVTVPDSLRST-FAYTQHVIDWTIGYS--NDETIRLCFV 474
            L T  DSLR+  F Y+ + I+ TIGYS  N + + L F+
Sbjct: 1068 LNTYADSLRNVQFPYSSY-IEETIGYSFKNKKLLHLAFI 1105


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 218 SNQRILCDSMQTHLLERVAIYFSSY--LLFCVGTXSRACCGFPRNV 349
           SN     + + + L ER++   +++  +LF  GT S   CGF R +
Sbjct: 133 SNTSKAPNGLDSELNERLSTLTNAHNVMLFLKGTPSEPACGFSRKL 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,508
Number of Sequences: 5004
Number of extensions: 57133
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)