Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0773
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374...    29   2.7  
06_03_1480 - 30432718-30432996,30433151-30434123,30434251-304345...    29   2.7  
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604...    29   4.7  
08_02_1125 + 24488073-24488244,24488358-24488398,24488621-244888...    28   6.2  

>10_06_0101 +
           10736987-10737100,10737263-10737301,10737397-10737474,
           10737539-10737685,10737781-10737888,10738115-10738449,
           10738572-10739544,10739702-10739980
          Length = 690

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 568 GTVTSYSATYPLVSKWXIMGRAFIP 642
           G +T Y+ TYPL   W ++G  + P
Sbjct: 613 GLITFYNLTYPLNRNWHVLGLGYDP 637


>06_03_1480 -
           30432718-30432996,30433151-30434123,30434251-30434585,
           30434929-30435075,30435498-30435569
          Length = 601

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 568 GTVTSYSATYPLVSKWXIMGRAFIPT 645
           G +T Y+ TYPL   W ++G  + P+
Sbjct: 524 GLITFYNLTYPLNRTWHVLGLGYDPS 549


>04_03_0199 - 12559351-12559433,12559693-12559827,12560260-12560437,
            12560848-12561389,12561398-12564827
          Length = 1455

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 70   FVKCFKCSKCYYSFKLYPGRI-FIYPEPQRVTIS*SSQYLHNLFFVLFQNIK 222
            F+K +KC     SF  +PGR+  ++P  +R+ I    + L   FF    ++K
Sbjct: 1176 FLKVYKCPSLSPSFLWFPGRVDELFPRLERLEID-DPRILSTSFFKYLGSLK 1226


>08_02_1125 +
           24488073-24488244,24488358-24488398,24488621-24488889,
           24489061-24489157,24489407-24489753,24489816-24490173,
           24490319-24490894,24491374-24491649
          Length = 711

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 565 SGTVTSYSATYPLVSKWXIMGRAFIP 642
           +G VT ++ T+PL  KW ++G  + P
Sbjct: 634 AGLVTFWNQTFPLDHKWHLLGLGYKP 659


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,320,446
Number of Sequences: 37544
Number of extensions: 338139
Number of successful extensions: 603
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)