Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0773
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23170-2|ABD63218.1|  150|Caenorhabditis elegans Hypothetical pr...    32   0.45 
AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical...    28   5.5  

>U23170-2|ABD63218.1|  150|Caenorhabditis elegans Hypothetical
           protein F58F12.4 protein.
          Length = 150

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 236 CDSMQTHLLERVAIYFSSYLLFCVGTXSRACCGFPRNVNICSNFSE 373
           C+ +QT LL  +A+      +F +G   R CC + R      +F +
Sbjct: 104 CEHIQTWLLSFLAVIIVFLSIFLIGCCVRCCCSYKRKTQQSYSFDD 149


>AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical
           protein B0511.2 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 58  NFEMFVKCFKCSKCYYSFKLYPGRIF-IYPEPQRVTIS*SSQYLHNLFF 201
           NFE+ +K F+  K +Y+    P +   IY + + VT    S   HN FF
Sbjct: 270 NFELKIKFFQ--KLWYNISENPLKYRKIYADSELVTFETQSHVFHNFFF 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,493,786
Number of Sequences: 27780
Number of extensions: 324256
Number of successful extensions: 715
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)