Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0773
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    30   1.7  
At5g47780.1 68418.m05902 glycosyl transferase family 8 protein c...    29   2.2  
At2g33020.1 68415.m04047 leucine-rich repeat family protein cont...    28   6.8  
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c...    27   9.0  

>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 79  CFKCSKCYYSFKLYPGRIFIYPEPQRVTI 165
           C++C  CYY   LY  +   YP P+ + I
Sbjct: 429 CYRCDHCYYQLDLYCAK---YPPPEFIDI 454


>At5g47780.1 68418.m05902 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8; strong similarity to unknown protein
           (emb|CAB71043.1)
          Length = 616

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 568 GTVTSYSATYPLVSKWXIMGRAFIPT 645
           G +T +  TYPL  KW I+G  + P+
Sbjct: 540 GLITFWRRTYPLDRKWHILGLGYNPS 565


>At2g33020.1 68415.m04047 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 864

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 508 YPIVQSITCCVYANVERRL-SGTVTSYSATYPLVS 609
           +P+VQ++T   +  +   L SGT+ SY  T+P +S
Sbjct: 247 FPLVQNLTKLSFLGLSDNLFSGTIPSYLFTFPSLS 281


>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 673

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 568 GTVTSYSATYPLVSKWXIMGRAFIPT 645
           G +T Y  T+PL   W ++G  + P+
Sbjct: 597 GLITFYGLTHPLNKAWHVLGLGYNPS 622


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,507
Number of Sequences: 28952
Number of extensions: 283568
Number of successful extensions: 566
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)