Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0772
         (707 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    42   0.020
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    40   0.060
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    39   0.10 

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 41.5 bits (93), Expect = 0.020
 Identities = 21/31 (67%), Positives = 22/31 (70%)
 Frame = +3

Query: 153 MGDDNHSPSGGPYARLPTRAINKKK*SLYSF 245
           MGD NHSPSG PYA LPTRA   K  SL+ F
Sbjct: 1   MGDGNHSPSGRPYASLPTRA-KMKLTSLFIF 30


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 39.9 bits (89), Expect = 0.060
 Identities = 19/21 (90%), Positives = 19/21 (90%)
 Frame = -3

Query: 630 SRFRSDDRFCEALLLLGPVLA 568
           SRFRSD RFCEALLLLG VLA
Sbjct: 85  SRFRSDGRFCEALLLLGLVLA 105


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 39.1 bits (87), Expect = 0.10
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +2

Query: 110  GRQRLGSAPGIAEVYGRR 163
            GRQRLGSAPGIAEV+GRR
Sbjct: 969  GRQRLGSAPGIAEVHGRR 986


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,619,899
Number of Sequences: 1657284
Number of extensions: 12141316
Number of successful extensions: 25570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25568
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)