Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0772
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   3.5  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   3.5  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   3.5  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   8.0  

>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 131 QSQAAAYPRNFIDNFYQRTYSLSFPLKND 45
           ++  A Y +N  + F +R YS + P+KN+
Sbjct: 502 RTSKAPYIQNIPNQFQRRAYSATIPVKNE 530


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
 Frame = -2

Query: 376 KFHWINGNALVKNTNATIA*KHLQSSEIHSRELTKYFQHYCRL*----NEYKLYFFLFIA 209
           +FHW   +  + +T  +I+ +HL S E    +      H C+L     NE + ++   ++
Sbjct: 671 RFHWKRDSPHMSST-PSISEEHLASEE--QEDFVPAVGH-CKLCGKYSNELRAHYQDCVS 726

Query: 208 LVGRRAYGPPDGE---WLSSPIDFSNARGRAKPLPTHVILLITFI 83
               R Y     E   W  +P DF   R     +PT ++  I FI
Sbjct: 727 STIDRQYQSKKSESPVWALNPDDFDQNRLTLLRVPTLIVSCINFI 771


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 36  QSNIVFKRKTKRISSLIKVINKITWVGSGLALPLALLKSMGDDNHS 173
           +++ + K  T+R   ++  I + T    G+A+    LK +   NHS
Sbjct: 809 ETSFILKNATRRSFVIMDEIGRGTTASDGIAIAYGCLKYLSTINHS 854


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 36  QSNIVFKRKTKRISSLIKVINKITWVGSGL 125
           Q+ +V+K+ TKR    +  +NK+  VGS L
Sbjct: 133 QTKVVWKQATKRGIPKVIFVNKMDRVGSSL 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,358
Number of Sequences: 5004
Number of extensions: 51846
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)