Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0772
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)                  29   4.9  
SB_41150| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
          Length = 318

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = +3

Query: 96  NKITWVGSGLALPLALLKSMGDDNHSPSGGPYARLPT 206
           N I    SG+  PLA   S  D  H P GGP A  PT
Sbjct: 26  NTIAPDSSGIFSPLASSTSASDSRHRPVGGP-AYSPT 61


>SB_41150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 527 RTSR*AHGAQTGNVANTGPSKSSASQNLSSDRKRDPLRRSGEKLQWVVSMG 679
           R +  +HG  T  ++ +G S ++ASQN  +DR+    R   EK +   ++G
Sbjct: 279 RQAESSHGGAT-KMSTSGSSAAAASQNSRADREHQSTRVEEEKEEMNDALG 328


>SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 232 LYFFLFIALVGRRAYGPPDGEWLSSPIDFSNAR 134
           L+  LF+  VGR+ +G PDG+   + I    AR
Sbjct: 7   LFSLLFVVHVGRQVHGAPDGDVEDTMIAEDEAR 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,965,568
Number of Sequences: 59808
Number of extensions: 371848
Number of successful extensions: 802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)