Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0772
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 64  VFLLKTMFDCQLMNSVIPA 8
           +FLL  MF+C ++   IP+
Sbjct: 605 LFLLLDMFNCVVVEETIPS 623


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/48 (18%), Positives = 23/48 (47%)
 Frame = +3

Query: 3   ARAGITEFINWQSNIVFKRKTKRISSLIKVINKITWVGSGLALPLALL 146
           A +G+  F  W+ ++  K +    ++   +  ++ W G  + + L +L
Sbjct: 25  AASGLRWFEIWRDSLPTKMRELNATACAALYERVEWSGPWILVTLIVL 72


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/31 (25%), Positives = 13/31 (41%)
 Frame = -3

Query: 672 DTTHWSFSPDLLSGSRFRSDDRFCEALLLLG 580
           D  HW    + L GS+ +  +      L +G
Sbjct: 439 DEAHWELEEESLQGSKIKESNSCSNDQLPMG 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,876
Number of Sequences: 438
Number of extensions: 3305
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)