Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0772
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    28   5.3  
At5g37630.1 68418.m04532 chromosome condensation family protein ...    28   7.0  
At5g54970.1 68418.m06846 expressed protein                             27   9.2  

>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 214 IALVGRRAYGPPDGEWLS-SPIDFSNARGRA 125
           + + G + Y P  GEW+  SP+D     GRA
Sbjct: 851 VIIKGTQVYNPERGEWMELSPLDVMQMIGRA 881


>At5g37630.1 68418.m04532 chromosome condensation family protein
           contains pfam profile: PF04154 chromosome condensation
           protein 3, C-terminal region
          Length = 1051

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 280 LTKYFQHYCRL*NEYKLYFF-LFIALVGRRAYGPPDGEWLSSPIDFSNARGRAKPLPTHV 104
           L+ +F+HY  L  ++K Y    F+ LV R  +   DG   SS    SN R RA  +   +
Sbjct: 755 LSVFFEHYASLSEKHKGYVSKAFVPLV-RSMWPGIDGNTKSSSYVVSNQRKRAVQVSRFI 813

Query: 103 ILLI 92
           + ++
Sbjct: 814 LQMM 817


>At5g54970.1 68418.m06846 expressed protein
          Length = 125

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -3

Query: 429 LVXNGCQNELFEP*VHSANFIGLTAMLSSKI---QTPRLLRSIYSQVRFTHASSQNTFSI 259
           LV     ++L +P   S N +   A  S  +   Q P LLR IY    +         S+
Sbjct: 40  LVSRSSLSQLVDPISPSENSVDEAAAASRNLTIDQVPHLLRKIYGPYSYQRKKLAAARSV 99

Query: 258 TAVCKTNIN 232
           +++   NIN
Sbjct: 100 SSMMMMNIN 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,033,627
Number of Sequences: 28952
Number of extensions: 263640
Number of successful extensions: 565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)