Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0771
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8YND0 Cluster: All4636 protein; n=4; Nostocaceae|Rep: ...    33   6.7  
UniRef50_Q4DUS8 Cluster: Putative uncharacterized protein; n=2; ...    33   8.9  

>UniRef50_Q8YND0 Cluster: All4636 protein; n=4; Nostocaceae|Rep:
           All4636 protein - Anabaena sp. (strain PCC 7120)
          Length = 401

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
 Frame = -2

Query: 410 RVFVYIYCLCFHSELQLF-LPGRVN---TFFSLXLFVMIKRLLVAQRPFQFQQDRWR 252
           R+F ++Y +       +F LPGR++   T FSL LF +I RL  +  P Q  Q+R+R
Sbjct: 92  RMFPFLYIILVTRSCLIFKLPGRLSVTLTSFSLFLFTLINRLPRSPLPIQ-AQERFR 147


>UniRef50_Q4DUS8 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 370

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 368 IPSENINSRCIQKLVRFPSFRRYIFHKQLSKSI-VAWYFA 484
           + S      C+++L R   F+RYI H++ S+S+ + W+ A
Sbjct: 15  VESRRHTDACVRQLSRSKEFQRYITHREYSESLQLTWFMA 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,227,566
Number of Sequences: 1657284
Number of extensions: 12557721
Number of successful extensions: 28263
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28259
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)