Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0771
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    31   0.16 
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    28   1.5  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    27   2.0  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    27   2.0  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    27   3.4  

>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 185 LSRTEALYTDATIGVDTPFWLLLATCPAETG 277
           L+ T A +T+ +IG+ T F +LL   PAE G
Sbjct: 313 LAITSAFFTNTSIGISTTFAVLLHEIPAEIG 343


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 410 RVFVYIYCLCFHSELQLFLPGRVNTFFSLXLFVMIKRLLVAQRPFQFQQD 261
           R++ +IYC  FH  + + L   +NT F   +F   +  L+  + +   QD
Sbjct: 155 RIYAHIYCSHFHVMVAMELESYLNTSFKHFVFFCREFGLMDNKEYAPMQD 204


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -1

Query: 297 TGGPKAFPVSAGQVASKSQKGVSTPIVASVYNASVRERLREET 169
           T G  A PV+ GQ     ++ +STP  AS    S RE L E T
Sbjct: 591 THGHSASPVNIGQKLDVPERPMSTPYTASKNPFSTRE-LAEPT 632


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 479 NTRQQYSYSIVCEIYTGEKMEIGRVFVYIYCLCFHSE 369
           N +++   S VCEI        G  ++    LCFHS+
Sbjct: 29  NKQEEIIASTVCEIGWEYSKSFGNAYICTSFLCFHSD 65


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = -3

Query: 238 RGVNTYCCISIQCLCSGKIEGGDSNQIFKKIFCKYNGVRTKSTLKLPLHHSTQRLLSCIE 59
           RG++ + C  I C    +     ++ +   +     GVR  + LK PLH    R L+ ++
Sbjct: 185 RGIHAWICDEIACSLDDRSRRMIASYLQVVVGNPQGGVRLINNLKRPLHPHLTRSLNILK 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,033
Number of Sequences: 5004
Number of extensions: 54514
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)