Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0771
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58450.1 68414.m06649 peptidyl-prolyl cis-trans isomerase FKB...    31   0.73 
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    31   0.97 
At3g57220.1 68416.m06370 UDP-GlcNAc:dolichol phosphate N-acetylg...    27   9.0  

>At1g58450.1 68414.m06649 peptidyl-prolyl cis-trans isomerase
           FKBP-type family protein similar to rof1 from
           (Arabidopsis thaliana) GI:1373396, GI:1354207; contains
           Pfam profile PF00515 TPR Domain
          Length = 164

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 250 QKPERGVNTYCCISIQCLCSGKIEGGDSNQI-FKKIFCKYNGVRTKSTLK 104
           QK ER    Y   + +C+ +GK EGGD  Q+   ++ C  NG      LK
Sbjct: 24  QKYERAAKKYNKAA-ECIENGKFEGGDEKQVKALRVSCFLNGAACSLKLK 72


>At2g48050.1 68415.m06014 expressed protein ; expression supported
           by MPSS
          Length = 1500

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 407 VFVYIYCLCFHSELQLFLPGRVNTFFSL 324
           VF++IYCL     LQL+L G ++ +F L
Sbjct: 89  VFMFIYCLSSFVSLQLWLSGFIDLYFYL 116


>At3g57220.1 68416.m06370 UDP-GlcNAc:dolichol phosphate
           N-acetylglucosamine-1-phosphate transferase, putative
           strong similarity to GI:5804772
          Length = 426

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -2

Query: 401 VYIYCLCFHSEL--QLFLPGRVNTFFSL-XLFVMIKRLLVAQR 282
           +Y+Y LCFH  +  +L  P  +N   SL   FV +K + VA R
Sbjct: 57  LYLYLLCFHYNVDNELKRPILINAGLSLVGFFVTLKLIPVAAR 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,507,398
Number of Sequences: 28952
Number of extensions: 283007
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)