Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0770
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.4  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.5  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   7.5  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 480 CNMFVLLCRYFVCV*FIL 427
           C + +LLC Y+ C  FI+
Sbjct: 290 CALIILLCIYYFCRAFII 307



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 480 CNMFVLLCRYFVCV*FILKLATRLLSVSFLTF 385
           C + +LLC Y+    FIL     LL V    F
Sbjct: 230 CVLIILLCIYYFYYAFILFTVHLLLLVCIYYF 261



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 465 LLCRYFVCV*FILKLATRLLSVSFLTFSI 379
           LLC Y+    FI+ L       +F+ F++
Sbjct: 97  LLCTYYFYYAFIILLCVYYFYYAFIIFTV 125


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 636 KCPK*KLNTRETVARVNTGVRWKKF*RSRPHAEGSRS 526
           K PK K+NT +T   +N+    +++ +SR     SRS
Sbjct: 179 KIPKAKINTGKTQYNLNSKSLPRQYSQSRGRHNQSRS 215


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 265 LIFLFTCTLSV 233
           LIFLF CTL +
Sbjct: 245 LIFLFNCTLII 255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,303
Number of Sequences: 336
Number of extensions: 4073
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)