Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0770
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869...    33   0.30 
11_01_0737 + 6211149-6211466,6212022-6212183,6212290-6213101,621...    32   0.39 

>01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,
            8696199-8696258,8696336-8696414,8696494-8696555,
            8697129-8697204,8697367-8697419,8698181-8698270,
            8698411-8698458
          Length = 1346

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 563  NFFHLTPVFTRATVSRVFNFYFGHLRQPSLGGTKFCFA 676
            ++  ++ +   ATVSR F F  G L   ++   K CFA
Sbjct: 1092 DYVKVSDILNEATVSRCFEFLLGDLSNANVSNVKLCFA 1129


>11_01_0737 +
           6211149-6211466,6212022-6212183,6212290-6213101,
           6213188-6213395,6214157-6214364,6214752-6215206,
           6215585-6216011,6216391-6216471,6216571-6216761,
           6216855-6216998
          Length = 1001

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 585 CLLGQPSPGCLIFISGIYDSQA 650
           C LG PS GC +F S +Y SQA
Sbjct: 174 CSLGNPSVGCSLFFSPLYTSQA 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,238
Number of Sequences: 37544
Number of extensions: 354066
Number of successful extensions: 626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)