Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0770
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9647| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_18012| Best HMM Match : Flavoprotein (HMM E-Value=4.4)              28   8.6  
SB_14972| Best HMM Match : UPF0066 (HMM E-Value=5.7)                   28   8.6  

>SB_9647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = +3

Query: 435 ITRTQSSDTTKQTYYIHNPPTINNQCSRLLYYVTLPREGAT 557
           + + +S++ ++  +YI  P   + +CSR  +Y+ +P+  +T
Sbjct: 76  VPKNRSTECSRSKHYIIVPKNRSTECSRSKHYIIVPKNRST 116


>SB_18012| Best HMM Match : Flavoprotein (HMM E-Value=4.4)
          Length = 180

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 472 HITFTIRPQSTISAPDYYTT 531
           H+TFTIR   T+S P Y  T
Sbjct: 27  HLTFTIRTHPTLSKPSYTIT 46


>SB_14972| Best HMM Match : UPF0066 (HMM E-Value=5.7)
          Length = 465

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +3

Query: 486 NPPTINNQCSRLLYYVTLPREGATSKTFSI*PRCLLGQPSPGCLIFISGI 635
           N PT  NQ SRL    TL  +G TS  +++   C+L   S    IF+SG+
Sbjct: 410 NTPTSQNQDSRLGNTSTLALKGNTSLPYTL--PCILSDNSTP-YIFMSGL 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,148,248
Number of Sequences: 59808
Number of extensions: 442249
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)