Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0770
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.93 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   1.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.6  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   6.6  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +2

Query: 365 VNFYAI-ENVKKLTLSKRVASFN------MNYTHTK*RHNKTNILHSQSAHNQQS 508
           VNF  +  NV  L  + R A+F+       N+ H + RH+  +   + + HN Q+
Sbjct: 396 VNFQILGANVNDLIRNSRCANFDNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQA 450


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 651 KLGCRKCPK*KLNTRETVARVNTGVRWKK 565
           +L CRKC K + N   +  ++     WKK
Sbjct: 372 RLTCRKCFKSRTNLDPSNRKLPAPANWKK 400


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 140 YKFSNIFSNDCLTKNNKYITTFPQTDLLFVPNVNIAIISVYI 15
           +     F++ C +K N    +  + DLLF    +  +I +YI
Sbjct: 209 FTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYI 250


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 140 YKFSNIFSNDCLTKNNKYITTFPQTDLLFVPNVNIAIISVYI 15
           +     F++ C +K N    +  + DLLF    +  +I +YI
Sbjct: 209 FTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYI 250


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 118 EKIFENL*KKAPNSSLREKSTDNIKNE 198
           EK+ E    +  NS  RE+  ++ KNE
Sbjct: 26  EKLLEERTNRKRNSRSREREQNSYKNE 52


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 118 EKIFENL*KKAPNSSLREKSTDNIKNE 198
           EK+ E    +  NS  RE+  ++ KNE
Sbjct: 26  EKLLEERTNRKRNSRSREREQNSYKNE 52


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = +1

Query: 517 DYYTT*PFRVRARPLKLFPSNPGVYSGNRLPGV*FLFRAFTTAKLRGNQVLFRV 678
           D+ TT    V    L L+P     Y+G  +    F+    +   L GN    RV
Sbjct: 357 DFQTTPTVSVEQPHLFLYPEVSSTYTGFGIQSTDFVGDCSSLLNLPGNDARRRV 410


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 627 SGIYDSQA*GEPSFVSRGFTYRYILLWY 710
           +G Y+ QA  + +   RGF   Y+++ Y
Sbjct: 95  AGYYECQADNQYAVDRRGFRTDYVMISY 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,735
Number of Sequences: 438
Number of extensions: 4537
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)