Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0769
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    59   5e-10
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    28   1.1  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   4.5  

>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
 Frame = +2

Query: 272 RFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFS--NGHQYLEY 445
           R  +  D M+F+C + W  +++K +DNL+TN +G++VL D  F + T  +   G +  + 
Sbjct: 64  RITETTDVMRFLCRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTEMAQI 123

Query: 446 APRYVAYTCGLIRG 487
              Y  +  G IRG
Sbjct: 124 TTPYFYFPSGFIRG 137



 Score = 33.9 bits (74), Expect = 0.022
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
 Frame = +3

Query: 108 DDIIFELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMER*RGN-GRVLKM 284
           D ++ EL+H+        K K++     E+D  ++E IGF  G KI ER   N  R+ + 
Sbjct: 9   DFLLIELVHTAKRLAEDRKKKSSSEKSIESDFQMLESIGFQVGRKITERLLLNRNRITET 68

Query: 285 N*IL*NSYVQIFGLVFTK-------NR*IIFVQTTKEFMYFKIM 395
             ++     +++ +VF K       NR  IFV T   F +F  M
Sbjct: 69  TDVMRFLCRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKM 112


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 302 FICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFS 421
           F+ ++     Y   ID   + HQG+Y+  +N  R +T  S
Sbjct: 458 FVVSEAGDFEYHDPIDGSESKHQGLYIKFENGSRIVTRLS 497


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 275 FKDELDTMKFICT--DFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGHQYLE 442
           +KD + +M+ I +   +   +Y K  D +  N  G+Y+ ++     L +F  G + +E
Sbjct: 129 WKDHIVSMQMISSVLKYLDKVYSKSADKVPVNENGIYIFREVV--LLNSFEIGEKCVE 184


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 426 VISTWNMLLDMLLTLVGSFEVDWLISVLQYCHSRSSV 536
           ++ T+ ++L + LT     + DW ISV +Y    SS+
Sbjct: 323 ILCTFVLVLSIGLTFSHGIKTDWYISVFRYLILFSSI 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,999
Number of Sequences: 5004
Number of extensions: 57150
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)