Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0769
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371     85   5e-17
04_04_1004 + 30035704-30035934,30036030-30036287,30036382-300364...    29   4.7  
04_04_0843 - 28619064-28619280,28619730-28619825,28620349-286207...    28   8.1  

>07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371
          Length = 185

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 17/104 (16%)
 Frame = +2

Query: 251 KITREWPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFS--- 421
           + T E PRF D L+ +KFIC DFW+ ++KKQIDNL+TNH+G +VLQDN FR+LT  S   
Sbjct: 51  RYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNHFRWLTRVSVDP 110

Query: 422 --------------NGHQYLEYAPRYVAYTCGLIRGGLANLCIT 511
                          G    +     + + CG+IRG L NL I+
Sbjct: 111 SVESMDATENDSTTLGDSAAQTTSMLLYFPCGIIRGALTNLGIS 154


>04_04_1004 +
           30035704-30035934,30036030-30036287,30036382-30036479,
           30036574-30037137,30037232-30037484,30037576-30037758,
           30037839-30038465
          Length = 737

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 377 YVLQDNAFRFLTNFSNGHQYLEYAPR--YVAYTCGLIRGGLANLCI 508
           Y+  + A  FLT+F  GH Y++  PR  ++    G I  G  N+ +
Sbjct: 499 YISMNQAVSFLTDFKLGH-YMKIPPRSMFLVQFIGTIVAGTVNMSV 543


>04_04_0843 -
           28619064-28619280,28619730-28619825,28620349-28620720,
           28620849-28621161,28621183-28621393,28621478-28621681,
           28622328-28622726
          Length = 603

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +2

Query: 356 RTNHQGVYVLQDNAFRFL---TNFSNG-HQYLEYAPRYVAYTCGLIRGGLANLC 505
           R  HQG    + + F F    T F +G  QY+E   +YV    GL+R GL   C
Sbjct: 147 RKGHQGWMKQEGSYFIFPGGGTMFPDGAEQYIEKLAQYVPLKSGLLRTGLDMGC 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,016
Number of Sequences: 37544
Number of extensions: 300707
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)