Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0769
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32168| Best HMM Match : TRAPP_Bet3 (HMM E-Value=8.9e-13) 77 1e-14
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 30 2.1
SB_19176| Best HMM Match : YGGT (HMM E-Value=1.1) 29 2.7
SB_31673| Best HMM Match : rve (HMM E-Value=6.7e-30) 28 6.3
SB_10873| Best HMM Match : Exo_endo_phos (HMM E-Value=0.068) 28 6.3
SB_5227| Best HMM Match : RnaseH (HMM E-Value=1.8) 28 6.3
SB_53136| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 8.3
SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_37116| Best HMM Match : rve (HMM E-Value=0.00013) 28 8.3
SB_27469| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08) 28 8.3
SB_25074| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_20768| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 8.3
SB_19109| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 8.3
SB_6874| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 8.3
SB_4788| Best HMM Match : rve (HMM E-Value=0) 28 8.3
SB_30990| Best HMM Match : RhoGEF (HMM E-Value=2.1) 28 8.3
SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 8.3
SB_25606| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 8.3
SB_21749| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 8.3
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 8.3
SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_2983| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 8.3
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_32168| Best HMM Match : TRAPP_Bet3 (HMM E-Value=8.9e-13)
Length = 122
Score = 77.4 bits (182), Expect = 1e-14
Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Frame = +2
Query: 317 FWTCIYKKQI--DNLRTNHQGVYVLQDNAFRFLTNFSNGHQYLEYAPRYVAYTCGLIRGG 490
F T I+ + + +R QGVYVLQDN FR LT S G QY E AP+++A+ CG+IRGG
Sbjct: 34 FHTTIHNLDVIAETVRKTSQGVYVLQDNKFRVLTQMSEGKQYTEVAPKFLAFPCGMIRGG 93
Query: 491 LANLCIT 511
LANL IT
Sbjct: 94 LANLGIT 100
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 517 VTAEVQSMPSCKFHIHVQRT 576
V+A+V MP+C+F I +QRT
Sbjct: 103 VSADVLPMPACRFQIVIQRT 122
>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 922
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ TNH+
Sbjct: 787 YAQIEKELLAIVFACDRFHTYVYGREVVNIETNHK 821
>SB_19176| Best HMM Match : YGGT (HMM E-Value=1.1)
Length = 409
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 148 FIISECNNSNMMSSAILEGSRYF 80
+++SEC SN S +I EG+++F
Sbjct: 27 YLLSECRESNTESGSICEGAKFF 49
>SB_31673| Best HMM Match : rve (HMM E-Value=6.7e-30)
Length = 426
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 305 ICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFS----NGHQYL-EYAPRYVAYT 469
+ D+++C Y+ I N T+H+ V L RF +S NG Q++ E RY+
Sbjct: 285 VIVDYYSCFYEVVIMNSTTSHKVVNALTQVFARFGFPYSIKSDNGSQFVSEEFTRYLR-E 343
Query: 470 CGL 478
CG+
Sbjct: 344 CGI 346
>SB_10873| Best HMM Match : Exo_endo_phos (HMM E-Value=0.068)
Length = 1142
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 87 LDPSRMADDIIFELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGF 227
L+ R+ D F +LHS +++ ++K +N K +LS E +GF
Sbjct: 976 LEYERVVADKPFNVLHSLLVSGFDTRYKLAENYIKAFELSAQEVVGF 1022
>SB_5227| Best HMM Match : RnaseH (HMM E-Value=1.8)
Length = 334
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 144 YAQIEKELFAIVFACDRFHTYVYGREVVNIETDHK 178
>SB_53136| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 934
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 715 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 749
>SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 783 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 817
>SB_37116| Best HMM Match : rve (HMM E-Value=0.00013)
Length = 383
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 40 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 74
>SB_27469| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08)
Length = 341
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 212 DNR-QISFLFAIIVILEFFNRIIYNFRM**FKYDV 111
DN+ I F + I+ I F N ++Y+FRM FK ++
Sbjct: 227 DNKLDIHFAWPILYINSFINVLVYSFRMEDFKREL 261
>SB_25074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 704 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 738
>SB_20768| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 208
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 73 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 107
>SB_19109| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 305
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 86 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 120
>SB_6874| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 349
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 263 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 297
>SB_4788| Best HMM Match : rve (HMM E-Value=0)
Length = 1125
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 40 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 74
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 590 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 624
>SB_30990| Best HMM Match : RhoGEF (HMM E-Value=2.1)
Length = 261
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 155 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 189
>SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 1045
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 748 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 782
>SB_25606| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 343
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 237 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 271
>SB_21749| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 353
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 61 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 95
>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 144 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 178
>SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 960
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 688 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 722
>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1164
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 235 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 269
>SB_2983| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 279
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 144 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 178
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 266 WPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQ 370
+ + + EL + F C F T +Y +++ N+ T+H+
Sbjct: 741 YAQIEKELLAIVFACDRFHTYVYGREVVNIETDHK 775
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,033,179
Number of Sequences: 59808
Number of extensions: 393033
Number of successful extensions: 722
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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