Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0769
         (697 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC030604-1|AAH30604.1|   94|Homo sapiens TRAPPC6B protein protein.    123   7e-28
BC004450-1|AAH04450.1|  173|Homo sapiens trafficking protein par...   111   3e-24
BC001907-1|AAH01907.1|  173|Homo sapiens trafficking protein par...   111   3e-24
AC005757-2|AAC62259.1|  160|Homo sapiens R32611_2 protein.            111   3e-24
BC047328-1|AAH47328.1|  130|Homo sapiens trafficking protein par...    74   4e-13

>BC030604-1|AAH30604.1|   94|Homo sapiens TRAPPC6B protein protein.
          Length = 94

 Score =  123 bits (296), Expect = 7e-28
 Identities = 53/71 (74%), Positives = 61/71 (85%)
 Frame = +2

Query: 296 MKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGHQYLEYAPRYVAYTCG 475
           MKFIC DFWT ++KKQIDNLRTNHQG+YVLQDN FR LT  S G QYLE+A +Y+A+TCG
Sbjct: 1   MKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCG 60

Query: 476 LIRGGLANLCI 508
           LIRGGL+NL I
Sbjct: 61  LIRGGLSNLGI 71



 Score = 35.5 bits (78), Expect = 0.18
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +1

Query: 511 SIVTAEVQSMPSCKFHIHVQR 573
           SIVTAEV SMP+CKF + +Q+
Sbjct: 73  SIVTAEVSSMPACKFQVMIQK 93


>BC004450-1|AAH04450.1|  173|Homo sapiens trafficking protein
           particle complex 6A protein.
          Length = 173

 Score =  111 bits (266), Expect = 3e-24
 Identities = 46/86 (53%), Positives = 65/86 (75%)
 Frame = +2

Query: 251 KITREWPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGH 430
           ++ RE   F++ELD +KF+C D W  +++KQ+D+LRTNHQG YVLQDN+F  L   ++G 
Sbjct: 65  RLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPMASGL 124

Query: 431 QYLEYAPRYVAYTCGLIRGGLANLCI 508
           QYLE AP+++A+TCGL+RG L  L I
Sbjct: 125 QYLEEAPKFLAFTCGLLRGALYTLGI 150


>BC001907-1|AAH01907.1|  173|Homo sapiens trafficking protein
           particle complex 6A protein.
          Length = 173

 Score =  111 bits (266), Expect = 3e-24
 Identities = 46/86 (53%), Positives = 65/86 (75%)
 Frame = +2

Query: 251 KITREWPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGH 430
           ++ RE   F++ELD +KF+C D W  +++KQ+D+LRTNHQG YVLQDN+F  L   ++G 
Sbjct: 65  RLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPMASGL 124

Query: 431 QYLEYAPRYVAYTCGLIRGGLANLCI 508
           QYLE AP+++A+TCGL+RG L  L I
Sbjct: 125 QYLEEAPKFLAFTCGLLRGALYTLGI 150


>AC005757-2|AAC62259.1|  160|Homo sapiens R32611_2 protein.
          Length = 160

 Score =  111 bits (266), Expect = 3e-24
 Identities = 46/86 (53%), Positives = 65/86 (75%)
 Frame = +2

Query: 251 KITREWPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGH 430
           ++ RE   F++ELD +KF+C D W  +++KQ+D+LRTNHQG YVLQDN+F  L   ++G 
Sbjct: 52  RLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPMASGL 111

Query: 431 QYLEYAPRYVAYTCGLIRGGLANLCI 508
           QYLE AP+++A+TCGL+RG L  L I
Sbjct: 112 QYLEEAPKFLAFTCGLLRGALYTLGI 137



 Score = 35.5 bits (78), Expect = 0.18
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 102 MADDIIFELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMER 254
           MAD ++FE LH+E++        +   G ++  LSV+E +GF  G  + ER
Sbjct: 2   MADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGER 52


>BC047328-1|AAH47328.1|  130|Homo sapiens trafficking protein
           particle complex 6B protein.
          Length = 130

 Score = 74.1 bits (174), Expect = 4e-13
 Identities = 44/86 (51%), Positives = 51/86 (59%)
 Frame = +2

Query: 251 KITREWPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGH 430
           + T++  RFKDELD MKFIC DFWT ++KKQIDNLRTN                     H
Sbjct: 50  RFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTN---------------------H 88

Query: 431 QYLEYAPRYVAYTCGLIRGGLANLCI 508
           QYL       A+TCGLIRGGL+NL I
Sbjct: 89  QYL-------AFTCGLIRGGLSNLGI 107



 Score = 35.5 bits (78), Expect = 0.18
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +1

Query: 511 SIVTAEVQSMPSCKFHIHVQR 573
           SIVTAEV SMP+CKF + +Q+
Sbjct: 109 SIVTAEVSSMPACKFQVMIQK 129



 Score = 32.7 bits (71), Expect = 1.3
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
 Frame = +3

Query: 102 MADDIIFELLHSEIINYSIEKFKNNDNGEKETD--LSVVEYIGFAAGYKIMER 254
           MAD+ +F LLH+E+++     +K+ + GE E    ++ +E +GF  G  ++ER
Sbjct: 1   MADEALFLLLHNEMVS---GVYKSAEQGEVENGRCITKLENMGFRVGQGLIER 50


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,951,733
Number of Sequences: 237096
Number of extensions: 1687072
Number of successful extensions: 2609
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2608
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)