Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0769
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05000.1 68416.m00543 transport protein particle (TRAPP) comp...    86   2e-17
At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase fa...    30   1.7  

>At3g05000.1 68416.m00543 transport protein particle (TRAPP)
           component Bet3 family protein similar to Transport
           protein particle 33 kDa subunit (TRAPP 33 kDa subunit)
           (Swiss-Prot:Q99394) [Saccharomyces cerevisiae]; contains
           Pfam profile PF04051: Transport protein particle (TRAPP)
           component, Bet3
          Length = 173

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 44/101 (43%), Positives = 61/101 (60%), Gaps = 15/101 (14%)
 Frame = +2

Query: 251 KITREWPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFS--- 421
           + T E PRF D L+ +KFIC DFW+ ++KKQIDNL+TNH+G +VLQDN FR+L+  S   
Sbjct: 51  RYTMERPRFSDHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDP 110

Query: 422 ------------NGHQYLEYAPRYVAYTCGLIRGGLANLCI 508
                          +  +    Y+ + CG+IRG L+NL I
Sbjct: 111 SSENETQDPSTPGESKAAQAVSMYLYFPCGIIRGVLSNLGI 151


>At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1218

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 458 VAYTCGLIRGGLANLCITVLSQQ 526
           + Y+C L+R G+  +CITV++ +
Sbjct: 750 IGYSCSLLRQGMKQICITVVNSE 772


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,642
Number of Sequences: 28952
Number of extensions: 270167
Number of successful extensions: 554
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)